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ET14394

CSHL Arabidopsis genetrap mutant lines

Original: ET14394

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14394

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15978093 [Map]; Strand: w
      • AT2G38120.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 913; Region: intergenic
      • AT2G38130.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: 419; Region: intergenic
    Flanking Genome Sequence: ET14394 - 5-prime edge 
    CCTACTTTAT CCCTGGATAA TCTAAGATGG TTGTGTTTGT GAAAAGAAAA 
    TTGTTTTATA GTAAAATACG GTATGCAATA AAAGTATTTC ATAAAATATC 
    TCATACCAAT TATGTCAAGC ATGTCTTTTC ATCTCAC

AT2G38120.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Curator Summary
Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
Computational Description
AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38130.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Curator Summary
Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.
Computational Description
ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 3613 Blast hits to 3609 proteins in 1331 species: Archae - 279; Bacteria - 1857; Metazoa - 641; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).
Link
InterPro Scan - TAIR