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ET14425

CSHL Arabidopsis genetrap mutant lines

Original: ET14425

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14425

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30226092 [Map]; Strand: w
      • AT1G80400.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET14425 - 5-prime edge 
    ACTCACATCA AGGTGAAGAG ACAGTATTAT CATCATCAAA TGCTACACAA 
    CAACACCCAA CTCATTCATC TCTTTCGAAG AAAAGACCAC CTTCTTCTAG 
    GAGAGGAGAT AACGGGAATG GTCGCCGTAC TAGGAGTCCA TTGAATTCTG 
    GCCTCTGGAT CTCAGTTGAG TTAGTTGTCA CTGTCGCTCA GATTGTTGCA 
    GCCATTGTAG TTATGGTTCT GGCTAAAGAT GAACATCCTG AAGCGCCATT 
    ATTTACTTGG GTTATTGGAT ATACTTGTGG CTGTCTAGCC ACTCTCCCTA 
    TTCTCTATTG GCGTTTTCGC ACTTATAATC GAGCTACAGG GCAAGACTCT

AT1G80400.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 10084 Blast hits to 10056 proteins in 295 species: Archae - 0; Bacteria - 8; Metazoa - 2540; Fungi - 826; Plants - 5176; Viruses - 44; Other Eukaryotes - 1490 (source: NCBI BLink).
Link
InterPro Scan - TAIR