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ET14453

CSHL Arabidopsis genetrap mutant lines

Original: ET14453

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14453

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11187185 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2671; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3358; Region: intergenic
    2. Chromosome: 5; Position: 11187687 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3173; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2856; Region: intergenic
    Flanking Genome Sequence: ET14453 - 5-prime edge 
    ACCATTCGCC GTGGGTCCCA CCCGCTATGT AGGAATACCC CATCTAGTCT 
    TAACGAGCTT TGACGCATGA AAAAATTCGA AAACAATGCT TGAACAAGTA 
    ATTTTGGGTC CGTAATATAG CCCAAATAAC GAAAATGCCC GAAAAAAAAC 
    TTAAAGGTCA AAATTTGGGG TCGACAAAAA GTCAATGGAA AAGTTCCATT 
    GTCCTGCTTC TTTCGTCGGA GGGCTGTCTT TGGGCTTTCC GAAAAGGTAT 
    CACATGCCAA GTTTGGCCTC ACGGTCTAAA AGTTATGGAG TCATAAAGTT 
    TTAACCAAAA AAAAAGGGTT AACCTTAAAA AAGGGTTGCA CCCCGGGGCC 
    TCCCGGGGGG GCCCCC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR