ET1758

CSHL Arabidopsis genetrap mutant lines

Original: ET1758

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET1758

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17979250 [Map]; Strand: c
      • AT4G38400.1 - [+] show detail - expansin-like A2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET1758 - 3-prime edge 
    ACCGACCGTT TTCATCCCTT TAGTAAAGGC TCTGCTGCTA AGGACAAGAT 
    CGGTTTGGTT GGTCTTGTTC AAGTCTGTGA CAATCACCGT GGTTCCTTTG 
    CTGCTGCAAA GCGTCGGGTT CTTGCATCTG ACCTGGAAGC AAGCTCCGCA 
    GCCGGAGCCG TCTTTGTAGA TGGAAGGCAG AGCCGCAGCA ATGTGTCCGG 
    CGAAGAAACC GGTAGCCATA GAGCCATATG CACAAGCTCC AGCTAAATTT 
    AAAAACCCAT AACATATACA AGAGATGAGA AAAGAAAAGG AAAAAAAAAA 
    AAACGGGAAA AATTGATTTT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17979053 [Map]; Strand: c
      • AT4G38400.1 - [+] show detail - expansin-like A2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET1758 - 5-prime edge 
    ATGTTATGCT AGCTTTTCTC ATTTTCCTTC AAGTAGCTAG TAGTAATAAG 
    AACTATTGAA TATTGAAACA GAGTTCCTTG CGATTACGGT AACAAGAAGA 
    TGAACGTGAG AGTTGAAGAA TCAAGCAGAA ATCCAAACTA CTTGGCGATA 
    AAGCTCTTGT ACCAAGGAGG CCAAACTGAA GTGGTAGCCA TTTACATTGC 
    TCAGGTTGGT TCGTCACATT GGAGTTACAT GACCAGAAGC CACGGAGCCG 
    TGTGGGTTAC TGACAAAGTA CCCAACGGAG CTCTGCAATT CAAGTTCGTG 
    GTGACCGCAG GCTACGACGG CAAAATGGTC TGGTCGCATA GGGTCCTTCC 
    GGCTAACTGG GAAGCTGGAA AGTCCTATGA CGCCGGCGTT CA

AT4G38400.1

Model type
Protein coding
Short Description
expansin-like A2
Curator Summary
member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin-like A2 (EXLA2); INVOLVED IN: response to cyclopentenone, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin-like A1 (TAIR:AT3G45970.1); Has 1877 Blast hits to 1874 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1869; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR