ET2342

CSHL Arabidopsis genetrap mutant lines

Original: ET2342

Phenotypes

Morphological phenotypes

Original description

  • pale, sick plant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • desaturated green (PATO:0001272)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: ET2342

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 599364 [Map]; Strand: w
      • AT4G01440.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: 646; Region: intergenic
      • AT4G01450.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: -9090; Region: intergenic
    Flanking Genome Sequence: ET2342 - 3-prime edge 
    TAAAAAGAAT ATGATAAAAT GAAGTATAAT TGAAAGAACG AATTTCTACA 
    TATATATTTT GAATTTGTGT ATATATGATA CACTCTGGGT GGAAGAAAGT 
    AAGTAACTCA GCTTTCTACT ATTAGCCTTT AGAAATCTAA TTAATGTGTT 
    AGCATAATCT TGGGTATGTT TCTGTTCATT GAGGTACGAT ATATCTATCT 
    AACTTATTAT CAATAAACTT ATAAACCAAA ATCAGCGAAA GCAGAAAAAA 
    GAATTATTTG GCGTACTATC ATATTTTAGA GGGCGTCTTA ACTCTTAACT 
    TCTAAAGTTT TGAGATAATT AAAGTATGTT TTTAAACTTT AATTTGGCTT 
    ATTAAACATA AACATTTCTT TTGATGATTT AGCTTCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7858846 [Map]; Strand: w
      • AT4G13500.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -913; Region: promoter
      • AT4G13505.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G13510.1 - [+] show detail - ammonium transporter 1;1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET2342 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACCCCAGAG TCCAACGATA 
    CCTCCGACCA TTTGAACAAC ACCGGACCCA GCGAAATCTA TCGCTCCGGT 
    GCTGAAAAAC AAATCTCCAT CTGTACGGAA CGGGCTGGCC CATCCATCAA 
    CTGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 149841 [Map]; Strand: c
      • AT4G00340.1 - [+] show detail - receptor-like protein kinase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET2342 - 5-prime edge 
    CGCTGTAATC ATCAGATCTC CACGCGGCGT CGTTCCTAGG CCGGAAACCA 
    CGGATACAGG CACAGGGCTT GAGCAATTCG CTGCTGCAAA ACCCTAATTG 
    ACCACAGAGA TTGTAAACGC GGCACGGATT CTCCGGCTGC AACCAGAACA 
    TGTTCCAGCT CTGCGTCTGT GGATCCCAAG TGTACTGCTT CA

AT4G00340.1

Model type
Protein coding
Short Description
receptor-like protein kinase 4
Curator Summary
Encodes a receptor-like protein kinase that is expressed in roots.
Computational Description
receptor-like protein kinase 4 (RLK4); FUNCTIONS IN: sugar binding, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 118915 Blast hits to 117390 proteins in 4385 species: Archae - 97; Bacteria - 13085; Metazoa - 43904; Fungi - 9417; Plants - 35014; Viruses - 433; Other Eukaryotes - 16965 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01440.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G01450.2); Has 3147 Blast hits to 3133 proteins in 491 species: Archae - 24; Bacteria - 1505; Metazoa - 6; Fungi - 0; Plants - 1206; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01450.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G01440.1); Has 2097 Blast hits to 2086 proteins in 318 species: Archae - 4; Bacteria - 822; Metazoa - 4; Fungi - 0; Plants - 1178; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G13500.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G13505.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G13510
Link
InterPro Scan - TAIR

AT4G13510.1

Model type
Protein coding
Short Description
ammonium transporter 1;1
Curator Summary
Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.
Computational Description
ammonium transporter 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport, protein polymerization, response to karrikin; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;3 (TAIR:AT3G24300.1); Has 11619 Blast hits to 11599 proteins in 2072 species: Archae - 224; Bacteria - 4688; Metazoa - 462; Fungi - 431; Plants - 505; Viruses - 0; Other Eukaryotes - 5309 (source: NCBI BLink).
Link
InterPro Scan - TAIR