ET51

CSHL Arabidopsis genetrap mutant lines

Original: ET51

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET51

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7279970 [Map]; Strand: c
      • AT5G22000.1 - [+] show detail - RING-H2 group F2A
        Distance: 0; Region: exon9 (3UTR)
      • AT5G22000.3 - [+] show detail - RING-H2 group F2A
        Distance: 0; Region: exon9 (3UTR)
      • AT5G22000.2 - [+] show detail - RING-H2 group F2A
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: ET51 - 3-prime edge
    CCGACCGTTA CCGACCGTTT TCATCCCTAA CCAAAAGGAG GCCTTAAAGA 
    CGCCTCTTTC TGTGTTATGT CAAACAAACA AAAAAAAACT AAAAAAAAAA
    ATTAAAATTA AAAAACCGTT TGGGGTTGTT GGGTATTTGG TCGGTCCGTT
    GTTAATTCCC ATTGTCCTTC ACATTACGGA TTTCCATAAA TTTCCACTTA
    TGTTTCTCCA AAAACTTGGT CTAACAAAAC CAATTTAATG TTTCAATTCC
    AGTGTACTAA AGTTATAAAG GTGTCCTGTG AATTCCGTCC AACAAACAAA
    ATTATGGTGC TTAATAATGG TTTTCCAATT AATTTTCACT TCCTAAAATG
    TTAATTTCAT CACCCCACCC AACCAAGTTT TGTAGGTTCC GTATTTTTAA
    AAAAAATTTT TGAACCTGTT TTTGCCCTTT TAATGAAAAT T
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25227933 [Map]; Strand: w
      • AT1G67330.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 12759; Region: intergenic
      • AT1G67340.1 - [+] show detail - HCP-like superfamily protein with MYND-type zinc finger
        Distance: -2332; Region: intergenic
    Flanking Genome Sequence: ET51 - 5-prime edge
    AAAATATGAA TTTCTTGTTT CTCTAAAGAG AAGTAACTAA CAACTAAAGT 
    ATTAGATATG TGAGGAAGAT TCATAAAACG ATAGATCTTG TTACAATGAA
    GCCTCAAGGT CAACTGATAC GTAAATAAAA TTTAATATTA TTAGAGACGT
    ATCTTGTTTG TGCACAAACT AATGTCAAAT CACGTCGGCT TCAAATATAA
    TTAGACCGTT CTACAATCAC AAATGTATGT ATTATAACCA ACCATTCTCT
    CATCGATATT ATCCTCGAAC TCGTTTAACT TTTTCACCCT CCAACTGTAT
    ATTTTTGCGT TCATCTCACT CG

AT1G67330.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Computational Description
Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67340.1

Model type
Protein coding
Short Description
HCP-like superfamily protein with MYND-type zinc finger
Computational Description
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22000.1

Model type
Protein coding
Short Description
RING-H2 group F2A
Curator Summary
encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.
Computational Description
RING-H2 group F2A (RHF2A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 group F1A (TAIR:AT4G14220.1); Has 8011 Blast hits to 5867 proteins in 317 species: Archae - 0; Bacteria - 141; Metazoa - 1822; Fungi - 396; Plants - 2620; Viruses - 42; Other Eukaryotes - 2990 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22000.2

Model type
Protein coding
Short Description
RING-H2 group F2A
Curator Summary
encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.
Computational Description
RING-H2 group F2A (RHF2A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 group F1A (TAIR:AT4G14220.1); Has 8047 Blast hits to 5903 proteins in 316 species: Archae - 0; Bacteria - 141; Metazoa - 1863; Fungi - 401; Plants - 2610; Viruses - 42; Other Eukaryotes - 2990 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22000.3

Model type
Protein coding
Short Description
RING-H2 group F2A
Curator Summary
encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.
Computational Description
RING-H2 group F2A (RHF2A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 group F1A (TAIR:AT4G14220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR