ET5230

CSHL Arabidopsis genetrap mutant lines

Original: ET5230

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5230

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110947 [Map]; Strand: w
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: -229; Region: promoter
    Flanking Genome Sequence: ET5230 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGAAGCGAT GATCAAAATT 
    TTACAACGGT TCCTCCATTT TCAGCGAAGG TAAGTCTCAC CTAATTCCTT 
    GGAACTAAGC TCCGCTGTGA TCCGAATGTA CTTATATATC TCTCTCTTCT 
    GATCAATCCA CAAACCGCCA TTGTTGCTTT TTTGAAATTT CGCTTCTGAT 
    GAAGAAATGT TGATCGGAGA AAACGTTGAA GACGTTTGAA TTTCTTTATG 
    AATTAGTCAG TTGTGGTGTT AGTTAGTTAC GATGGAGAAT TATGGTTGGA 
    ATTACCCTTA TTACCCTTAC AGGCCTCCGC GGTCTAATCC TCCTTACCCA 
    GCACCGCCTC ATCACCATGG ATCAATGTCT CATTCGGGTC CATTAGACCA 
    CCACCACCCT CCAATGAGTT ACTATGCGTC TTTTGATTAC CAACACCATC 
    CTCCTCCTCC TTACCCTCCA GTGAGTTACT ATGCTTCGTT TTCAAGTCAT 
    TCAGATTTA

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR