ET5259

CSHL Arabidopsis genetrap mutant lines

Original: ET5259

Phenotypes

Morphological phenotypes

Original description

  • apetala-like
Anatomical entity
/structure development stage		 Phenotypes
flower (PO:0009046)
  • abnormal (PATO:0000460)

Original: ET5259

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20166342 [Map]; Strand: c
      • AT5G49660.1 - [+] show detail - Leucine-rich repeat transmembrane protein kinase family protein
        Distance: -1613; Region: intergenic
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 660; Region: intergenic
    Flanking Genome Sequence: ET5259 - 5-prime edge 
    ATAAATCATT GGTTTTTAGA TATACAGATA CTGGAANTGT TGGTTTTTAA 
    TTGCTTNTGA CATATGAATA TTAGGCCTGG TAGTTCGGAT ATTCGGTTCA 
    TCTCTNTCGA NTACGGGTTT TTGAAATTTA GAAATTTTGG ATCTATTTGG 
    ATATTTTAAA ACTTCCGGTT TGTGTCGGAT TCATCTCNCT CN

AT5G49660.1

Model type
Protein coding
Short Description
Leucine-rich repeat transmembrane protein kinase family protein
Computational Description
Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G09970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49665.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR