ET5290

CSHL Arabidopsis genetrap mutant lines

Original: ET5290

Phenotypes

Morphological phenotypes

Original description

  • apetala-like
Anatomical entity
/structure development stage		 Phenotypes
flower (PO:0009046)
  • abnormal (PATO:0000460)

Original: ET5290

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 626593 [Map]; Strand: c
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: -743; Region: promoter
      • AT4G01480.1 - [+] show detail - pyrophosphorylase 5
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET5290 - 5-prime edge 
    TTTTCCTATC TAGGCCATCG CCCCGATGAA TCTTATAGTN TGACGANACA 
    ACCTCTCNTN TAAACGTGGA GTAGGGTTCN GAAGCGTCTT CNGAGGTTGA 
    CTCGTTTGCA CGTCTTCTCC ANTCANNTAA TAAAANGGAG CNNANCAGAA 
    CCAAACGTTA GAATCTTGTT AGTCAATTTT CATGACTTCA CGTCTAAATC 
    AATATAGAAT CTTTTCACTA TTGATGCTGA TAACACGATC CATCACTCAA 
    AGATTTAACN TCAGATTCTA CTAGTACGAT AAACATCAAT CATCTTCAAG 
    ATCGAAGTTA ACANNGTCTA CATAATTCAG CTAAACACTA ACAATTTGTA 
    TCGAATNNGT TCNTCTCNCT CGACGANGGN AGNCTT

AT4G01470.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 1;3
Curator Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational Description
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01480.1

Model type
Protein coding
Short Description
pyrophosphorylase 5
Curator Summary
Encodes a protein that might have inorganic pyrophosphatase activity.
Computational Description
pyrophosphorylase 5 (PPa5); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 1 (TAIR:AT1G01050.1); Has 5969 Blast hits to 5969 proteins in 1836 species: Archae - 171; Bacteria - 4299; Metazoa - 244; Fungi - 260; Plants - 269; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).
Link
InterPro Scan - TAIR