ET5588

CSHL Arabidopsis genetrap mutant lines

Original: ET5588

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5588

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26241561 [Map]; Strand: w
      • AT1G69760.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -853; Region: promoter
    Flanking Genome Sequence: ET5588 - 3-prime edge 
    CTTTTTTTCT TTTGTCTCTC TTACAAAATG TAAATAATAA TATACACAAA 
    GCAATAAAAT ACAGGAGCAT AATCCTTTCG AAACATTATA ATATTACATG 
    ACAAAAATGT TAGGCCACTG CATTTACATT TTACAAGTCC CACTGAACAA 
    ATTTTCTCAC CAAGTACTTC TATTTATGAA CTTTTATTAT TTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26260490 [Map]; Strand: w
      • AT1G69780.1 - [+] show detail - Homeobox-leucine zipper protein family
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: ET5588 - 5-prime edge 
    ACCATTCTGG TTTTTGGCCA TGGCTTGATC AGCAACAGTA CAATTGAAAT 
    TGGTCTACCT GTTTTTTTTG TTTTTGTTTT TAAAAAAATT TATATTTTTT 
    TTTGGTTTTG GGATTTTGGT TCAAAAAACC CCTTGCTTGT TTTAAAAACC 
    GGGATTTTTT TTATTTGGCT GATTTGGAAT TTGGCACCCA ACCCCCCTTG 
    GGGTTTTTGG TTACTTTTTG GGGTAATGGA AATGTAAAAA ATGGGGTATT 
    TTCCTTCTTT TTTTTTAAAA ATTATTTTCT TTTTGGCCCA CCTTTTTTT

AT1G69760.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26920.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR