ET5590

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET5590

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 9967584 [Map]; Strand: c
- AT5G27930.1 - [+] show detail - Protein phosphatase 2C family protein
  Distance: -7245; Region: intergenic
- AT5G27940.1 - [+] show detail - WPP domain protein 3
  Distance: -6827; Region: intergenic

AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTG 
TTGTCTGAGT ATTTATGTTA TTTTAACAAC TGCTGATTGA TTTTACTTTT 
GAAAAAAAAA ATAGAACTAT TGAGTAAATT TTCATGGCTG ATTTCTAAAG 
GTTTATAAAA AAACAGGGGA AAAAAGTAAA ACTCCAATGT TGTATGATAT 
TGGGGGGAAA AAACCCATAA AATTAGCATA AAGGCCCATA ATTATACTTG 
AAATTGTTCA AAACCGGAAA ATTTCCTTAG GTTAAAGTTT CCTCCTTACC 
CGGACCAAAA CTTCAAAACA AACTTTGCAG ATAGATTAAA AAACAACCTT 
CAAGGAAAAA TGAAAAACCA AAGATCTTCT GAATTAGGTA AAAAGAGCAA 
TTCCATTTAG AGAAAAAAAA TTGAA

3 prime edge [+] show sequence

Chromosome: 3; Position: 9680310 [Map]; Strand: w
- AT3G26445.1 - [+] show detail - beta-1,4-N-acetylglucosaminyltransferase family protein
  Distance: 0; Region: exon2 (CDS)

GATNNNANGG ACCGTTACCG ACCGTTTTCA TCNCTAGTAG NGTCTGATGT 
TGATGAGATC CCGAGTAGAC ATACTGTAAA TCTTTTGAGA TGGTGCAATG 
AGATTACGCA GATCCCTCAT CTACGGCTCA AGAACAGTCT TTATTCGTTT 
GAGTTCCTTC TTGATAACNA GAGCTGGAGA GCTTCCGTGC ACAGGTTTCA 
GATGGGTAAA ACACGTTATG CTCATTACCC ACTATCTATC TGATGATATC 
TTGGCTGATG CAGGATGGCA TTGCACGGCG TATCAACGAG TTTATATTCA 
AGATGAAAGC TTATAGTCAT TACTCATTAT GATAAGAGTG AGGTTTGGTC 
ATTTCTTTGA ACCAAGAAAC ATAATGTATT GTAATGAGAG CATACTACAA 
TTTCTCAAAT TATTTTGCCA CAATCTGAAA TGAACACAGA TTAGTATTGA 
CAATTGTATA TTATAGAAAT GAAGAGTTTA TTAAGAACTT TATTAACTGT 
TTTGTTACTA CAGTATAACT GTTTCTAGAA CAGAGCTATA TTGTTCTTTT 
CAAAGAATGT GTCTTGTGTG TGTATGCTTG CTTATGTGCT TATCATATCA 
ACATTCTATT TCTCTTTTTT TTTTACTGAA AGTGCTATCT GAACACTAAA 
GGTTGTTATC CAGTTCCCCN CCCTTTTGGT TTAATTNCTT TTAAANTTTG 
AAAAGGCAAA TGCNATTTCT TTCAAAAACT TCT

3 prime edge [+] show sequence

Chromosome: 3; Position: 9680271 [Map]; Strand: w
- AT3G26445.1 - [+] show detail - beta-1,4-N-acetylglucosaminyltransferase family protein
  Distance: 0; Region: exon2 (CDS)

ATGTCTGATG TTGATGAGAT CCCGAGTAGA CATACTGTAA ATCTTTTGAG 
ATGGTGCAAT GAGATTACGC AGATCCCTCA TCTACGGCTC AAGAACAGTC 
TTTATTCGTT TGAGTTCCTT CTTGATAACA AGAGCTGGAG AGCTTCCGTG 
CACAGGTTTC AGATGGGTAA AACACGTTAT GCTCATTACC CACTATCTAT 
CTGATGATAT CTTGGCTGAT GCAGGATGGC ATTGCACGGC GTATCAACGA 
GTTTATATTC AAGATGAAAG CTTATAGTCA TTACTCATTA TGATAAGAGT 
GAGGTTTGGT CATTTCTTTG AACCAAGAAA CATAATGTAT TGTAATGAGA 
GCATACTACA ATTTCTCAAA TTATTTTGCC ACAATCTGAA ATGAACACAG 
ATTAG

5 prime edge [+] show sequence

Chromosome: 3; Position: 9680350 [Map]; Strand: w
- AT3G26445.1 - [+] show detail - beta-1,4-N-acetylglucosaminyltransferase family protein
  Distance: 0; Region: exon2 (CDS)

TTGGGGNNNN NTTGCNTTTC CCATCCTACT TTCATCCCTG GACATTATCA 
ACAAATCAGC AAGGACAAAT GNCGGAACAA TCACTAACAA GAACACATAA 
GACTCCATAT CTACACCACG TAGAAAACAA CAAAGCCTAT AGATACTGAA 
AACTGTACCA GAATCCTACC TAAGTCCTAA AACCCTAAAC AGAAGCTAGG 
AACTTGCTCT TGAATCGAGC TTAGCTTCTC AAAATTCGAG TGAAAGATTA 
AAACTTTAAA GAAGGGTACA CGAAAACAAG CAGATCGGAG AATCAAACCC 
TGGCCGGATA TATCATCCAT CAGTCTTCTT AAAACACTAG TGAGTAGTGT 
CCGTCGTCTT CTTCCTTCAA CAGTTCATCC ACCACATTTC CGTAAACCAG 
ATAATTTGGG CTTGACTTAT ATAAGGCCCA TTAACCGCCA AAGGTCAAAG 
ACTCCAACGA CGATNACCAT GGCCTCATGG GCTTGTTTAT GCAATGAAAG 
ATTGACATCA ATCAGATTGC ACAGCACTAC

5 prime edge [+] show sequence

Not mapped

GGTCTAAAGA GGTCCGTTCA TCGGAATAAA GTTCTGGGTT TAAAGCTTAT 
TTGGATGATT TTCACTTCTG CTGGATCTCT TTGGGTTTCC TGGGTGAGAA 
GAAATCTTAT TGGGACGAGA AACTTCTGGG ATATGAAGAA TATGACCTCG 
GGGAGTTGGA TTTGGAAAAG TTTGTGCAAG TTAAGATCTC TTGCAAGACC 
ATTCATTGTG TGTGAGATAG GTTCAGGAAT TACTTGCAAT TTTTGGACTG 
ATAATTGGAC ATCTTTAGGT CCTCTTGTGG ATGTAACAGG AGATCTCGGT 
CCTA

AT3G26445.1

Model type: Protein coding
Short Description: beta-1,4-N-acetylglucosaminyltransferase family protein
Computational Description: beta-1,4-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: beta-1,4-N-acetylglucosaminyltransferase family protein (TAIR:AT1G12990.1); Has 143 Blast hits to 129 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G27930.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G05640.2); Has 5854 Blast hits to 5851 proteins in 292 species: Archae - 2; Bacteria - 6; Metazoa - 1439; Fungi - 687; Plants - 2519; Viruses - 5; Other Eukaryotes - 1196 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G27940.1

Model type: Protein coding
Short Description: WPP domain protein 3
Computational Description: WPP domain protein 3 (WPP3); BEST Arabidopsis thaliana protein match is: WPP domain protein 2 (TAIR:AT1G47200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR