ET5640

CSHL Arabidopsis genetrap mutant lines

Original: ET5640

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5640

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10691952 [Map]; Strand: c
      • AT1G30330.2 - [+] show detail - auxin response factor 6
        Distance: -1114; Region: intergenic
      • AT1G30340.1 - [+] show detail - transposable element gene
        Distance: -5047; Region: intergenic
    Flanking Genome Sequence: ET5640 - 3-prime edge 
    ACAAATAGAT CAGTACCATC GTCATATCTT TTGTAGATTT TATTTATTTA 
    TTTGTATTAA ATTCAGTTGC ATTATTGTCA GTTGCTACAT ATGGCACTGT 
    CAACTGGACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3208209 [Map]; Strand: w
      • AT3G10350.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -30; Region: promoter
      • AT3G10350.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -55; Region: promoter
    Flanking Genome Sequence: ET5640 - 5-prime edge 
    TGGATACAAA AAATTAGAGA AGAAATCTTC ATTTTGGGAA AAAGAGACGA 
    ACTTGGGGAC TACATATGGT ACTGTCAACT GG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3208243 [Map]; Strand: w
      • AT3G10350.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10350.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -21; Region: promoter
    Flanking Genome Sequence: ET5640 - 5-prime edge 
    GGGCAAAAAG AGACGAATTT GGGGACTAGT TACTTATTTA ATAAAGAGTG 
    TTGTTGGGAG CAAAAACAGG GAGATAAATA GTTTCTCGGC ACCGCTTCTT 
    TGTATAGCAC AGAAGTGAAG AGCAAGCAGA CGAAAAAAAT GGCGACTCTG 
    TCTTCCTATC TGTTATCTTC TCCTCCTCTA TGCAAATCCC GATTCTCGGC 
    AACAAGTCTC GTCTCAGGAA TTGATTTCAT CTCTTNCTCT CCTCGAACAA 
    CTCTCTCCTC GTCATCCACT GTCTTGCCGG CGATTCTTTC TCTTTCCGTT 
    AAACATAATC GCCGGAGAAA CTCGCTTCAA GGTTCGAATT CTAAAGTTTT 
    CCTTTTTCTT AATCTGAAAC AGGATTGGAT TAGCTTAGCT TCTCTTGATT 
    TTGATTTTGA TTTCTGGGTT TCAGTGAAAT CAGTAGCTAG CCCAACGGAG 
    ACGATTTCAG AATTCGATGA GATGGTCTCC GGCACGAAAC GAAAGTATTA 
    CATGCTCGGT GGGAAAGGAG GAGTGGGCAA AACTAGTTGT GCTGCTTCTT 
    TAGCTGTGAG ATTCGCCAAC AATGGACACC CAACT

AT1G30330.2

Model type
Protein coding
Short Description
auxin response factor 6
Curator Summary
Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.
Computational Description
auxin response factor 6 (ARF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 8 (TAIR:AT5G37020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30340.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT3G10350.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: Anion-transporting ATPase (TAIR:AT5G60730.1); Has 2945 Blast hits to 2509 proteins in 789 species: Archae - 176; Bacteria - 2046; Metazoa - 144; Fungi - 222; Plants - 103; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10350.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: Anion-transporting ATPase (TAIR:AT5G60730.1).
Link
InterPro Scan - TAIR