ET5663

CSHL Arabidopsis genetrap mutant lines

Original: ET5663

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5663

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25436924 [Map]; Strand: w
      • AT1G67840.1 - [+] show detail - chloroplast sensor kinase
        Distance: 0; Region: exon9 (3UTR)
      • AT1G67840.2 - [+] show detail - chloroplast sensor kinase
        Distance: 0; Region: exon9 (3UTR)
      • AT1G67850.1 - [+] show detail - Protein of unknown function (DUF707)
        Distance: -976; Region: promoter
      • AT1G67850.2 - [+] show detail - Protein of unknown function (DUF707)
        Distance: -990; Region: promoter
    Flanking Genome Sequence: ET5663 - 5-prime edge 
    TCTCTTTGTG AATCTTTTTA GTCTCGAGTC CGATTTGTGG TGAAGCCAAT 
    GTATAGTCTA TTTTGTGATA TGTTGATCAA TGTGTAATAA CACCTTAATA 
    TGTACATAAA CCCAAAAGAG TCATGTCTAC ATGTGGACTT TGTAACGTAA 
    ATATATAGCT CTATTCTTAT GTAAGTGATA TAGGAAGACT TGAACATAAT 
    TGATTGCAAT TGTATTTCAA CCTTCTTTTA ACTTCAAATG CCTTTTTACC 
    GTATCATCTT CTAAACTTCT CACGTGGGGG ACCTCTTATT AAAGAAAGTG 
    GACTCCTCAG TTTGGTACGA AATCTACATT TTCCTTGTTA TAGAGTTTGG 
    CAAATCTATG TTATCAATGG ACATAATCAA ACTTTTCATT GGCTTTAAAT 
    CACTCAAAAT ATAGCAATGC CATACAATTC TTCCAACCTC TCTATTTTTT 
    TTTTTTTTTT TCCAACCACT CCAACCCCCT TTTTTA

AT1G67840.1

Model type
Protein coding
Short Description
chloroplast sensor kinase
Curator Summary
Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
Computational Description
chloroplast sensor kinase (CSK); CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); Has 698 Blast hits to 698 proteins in 263 species: Archae - 2; Bacteria - 628; Metazoa - 0; Fungi - 1; Plants - 41; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67840.2

Model type
Protein coding
Short Description
chloroplast sensor kinase
Curator Summary
Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
Computational Description
chloroplast sensor kinase (CSK); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67850.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF707)
Computational Description
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 324 Blast hits to 323 proteins in 26 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67850.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF707)
Computational Description
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR