ET5675

CSHL Arabidopsis genetrap mutant lines

Original: ET5675

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5675

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 82772 [Map]; Strand: w
      • AT2G01100.2 - [+] show detail - unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archa...
        Distance: 0; Region: exon3 (CDS)
      • AT2G01100.1 - [+] show detail - unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archa...
        Distance: 0; Region: exon3 (CDS)
      • AT2G01100.3 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET5675 - 3-prime edge 
    GTTTTCATCC CTAGTTGTGC CTGTGATATT TGCCTCGCCT TCTTCTTCCA 
    CTCTCTTCCT CACTATCACT TGAAGTGACC ACCTCACTGC GCCTGTGATG 
    CTTTAAATGT TTTCTTCTAC ATCTTCGGTA CTGTCATCAT CGCAAGTCTT 
    TCTTGAGCTA TGCCACTTGT GCCTCCGATG GTGCTTTATC TTCATCCTCA 
    GCTCATCCTC TGACCCACTT TCATAATCAC CAGTGCTATC ATCACTTGGA 
    CTCAAGGACC TTCTTTTCTG CCTCCTGGAT TTCTTCTCTT TCCTCCTATC 
    ACTGTCATCT GAATCAGAGT GTGCATGTCT TCGGTGCTTA TTGTGAGATC 
    TTCTAGACTT TCTTCTCACC TCAGAGCTAC TATCACTTTC TGAGATAAAT 
    TCAGACGCAG CCCTTTGTTT TCTCTTAGGG CCCTTTGATT TCCTCACTTT 
    AGTATCTGTG TCAGCTTTGG CATTCGCAGC CGCTTCTAGC TTCTGCTCCC 
    ATTTCAAAGG AGCTTCTTGC TTCTAAGACT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13988821 [Map]; Strand: c
      • AT5G35805.1 - [+] show detail - transposable element gene
        Distance: -5170; Region: intergenic
      • AT5G35810.1 - [+] show detail - Ankyrin repeat family protein
        Distance: 4607; Region: intergenic
    Flanking Genome Sequence: ET5675 - 5-prime edge 
    CTCTTGTGTG TAAGTAGGTC AGCAGTTCAA CTCCCTATTG ACACAGTTTT 
    CCATCTTTGT TTTTTAATAA AACGATGCTT TGTTATAGAA GGGCCGGTTG 
    TTAACGGGCC GGGCTTAGCG ATATTAATAT CTAGCAGTCG CTTTCATTGA 
    CCTTTTACTT CAT

AT2G01100.1

Model type
Protein coding
Computational Description
unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archae - 0; Bacteria - 1003; Metazoa - 10257; Fungi - 1826; Plants - 1570; Viruses - 56; Other Eukaryotes - 4708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01100.2

Model type
Protein coding
Computational Description
unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archae - 0; Bacteria - 1003; Metazoa - 10257; Fungi - 1826; Plants - 1570; Viruses - 56; Other Eukaryotes - 4708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01100.3

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35805.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR

AT5G35810.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G54070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR