ET5684

CSHL Arabidopsis genetrap mutant lines

Original: ET5684

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5684

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1044924 [Map]; Strand: w
      • AT1G04040.1 - [+] show detail - HAD superfamily, subfamily IIIB acid phosphatase
        Distance: -1060; Region: intergenic
      • AT1G04050.1 - [+] show detail - homolog of SU(var)3-9 1
        Distance: 674; Region: intergenic
    Flanking Genome Sequence: ET5684 - 5-prime edge 
    GGGTTTGCTA GCTAGCAGGC AAGGATAGAT GTCGACAAAA TTTAAATATT 
    GTTAAATATA TACACGAAAT ACATATAGAA ATGGTAAAAG TAAAACATGA 
    CGCTCATGAA CAACTCAAAC CTATTTTTAA CCAAAACAAA AAAAAACCAC 
    CTCATACCGG TTTTTAAAAA TTTTAACATT TTTTTTTTTA ATCCTAAACT 
    CTTTTTTTCT TCTCTCTGGA CGAGGGGAAA ATAAATTGGG TTCTTTTATT 
    GGATTTTAGG TGGGGTTTAG TTTTTAAGTC TTTAAAACCC CTCGGTTTTC 
    CAGCAAAGCC CGTTTCC

AT1G04040.1

Model type
Protein coding
Short Description
HAD superfamily, subfamily IIIB acid phosphatase
Computational Description
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT5G44020.1); Has 1079 Blast hits to 1077 proteins in 335 species: Archae - 0; Bacteria - 592; Metazoa - 2; Fungi - 0; Plants - 364; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04050.1

Model type
Protein coding
Short Description
homolog of SU(var)3-9 1
Curator Summary
Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
Computational Description
homolog of SU(var)3-9 1 (SUVR1); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR