ET5686

CSHL Arabidopsis genetrap mutant lines

Original: ET5686

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5686

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 501963 [Map]; Strand: c
      • AT1G02450.1 - [+] show detail - NIM1-interacting 1
        Distance: -3447; Region: intergenic
      • AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 2710; Region: intergenic
    Flanking Genome Sequence: ET5686 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATTGA AGCCGACAAA 
    CTTGCTCAAA AGCTGAAAGC GAAGAGTGAA GGAAAAAAAA AGGGGTAGGA
    GGGGCTGAAA TCTATGAAAA AAATCACTTT TAATTTCACT GCCACATTGT
    AAGAGTGGGA CTGTTTTAAA TAAGCCTTTA TGGTCTAAAA GGCATCCTTT
    ATTCTCTCTT TTAACCTTTG GCATCCTTAA TTCATCTCTT TGGAAGTTTC
    CGATCCTTTT TTTTTAAAAA AAATTTAATT TTCCCCACCT TAAAACATGC
    TTCATTTTTC CCATGTTGGC CCATGCTTGT AAAGGGCAAA GAGTTTAAAA
    GTTGTTGTAA AAAGCATAAA AAATTTGAAC CCTTTTTTTT TTTT
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET5686 - 5-prime edge
    CCTTTCTTCT ACTTGTTCTC AAGTTCTTCT TCATAAAGGC CATTGGGACT 
    ATTAATCTAT CATCGTCGTC ATCGACTATA CCCACATGAG AAACTAAAAA
    CTTGCTTAAC ATAGCAGGAG TGCGAGGAAT ATGTAGGACG AAGTGGGGGA
    AAAACATTGT AACCATCACA CCTACGAAGG GTAAAATTAA AATTCTAAAG
    AGGAAACTAA GCCCTATTAC ATTCCCAGCT GCAATAACCA TGGCGACAAA
    GAATGCT
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET5686 - 5-prime edge
    TCTAGCCTTT CTTCTACTTG TTCTCATTTT CTTCTTCATA AAGGCCATTG 
    GGACTATTAA TCTATCATCG TCGTCATCGA CTATACCCAC ATGAGAAACT
    AAAAACTTGC TAAACATAGC ATGTTTGCGA GGAATATGTC GGACGTAGTG
    AGGGAAAAAC ATTGACACCA TCACACCTAC GAAGGGTGAA ATTAAACTAA
    TAAAGAGGCA ACTAAGCCAT ATTACATTCC CAGCTGCAAT AACCATGGCG
    ACAAAGAATG CTCTGCAATA ACCATGGCGA CAAAGAATGC TCAGCTCATG
    AAATATATAG CCAAACACAC TAATGCCATG GCCACCCTTG CGAAACTCTG
    ATTTAGTGCA GGATCACCTA ATTG

AT1G02450.1

Model type
Protein coding
Short Description
NIM1-interacting 1
Curator Summary
NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.
Computational Description
NIM1-interacting 1 (NIMIN1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of systemic acquired resistance, defense response to bacterium, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: systemic acquired resistance (SAR) regulator protein NIMIN-1-related (TAIR:AT4G01895.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02460.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, stamen, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1); Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6; Bacteria - 1539; Metazoa - 261; Fungi - 1343; Plants - 1850; Viruses - 100; Other Eukaryotes - 314 (source: NCBI BLink).
Link
InterPro Scan - TAIR