ET5729

CSHL Arabidopsis genetrap mutant lines

Original: ET5729

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5729

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 30929 [Map]; Strand: w
      • AT2G01029.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET5729 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACGTTG 
    AGAGGAGCCT TGCTGAGTCA AACTCAATAG TTCTGGTAAC CGTGTCAAAT 
    CTGCAATGGT CGGTTTCTCT TCGATTGTGA CTTCTTTCAA CATGCCTCGA 
    CTAGGCGATC TATGTGTGGC AGTGGATAAC TGTCTTTAGG GCAAGCCCTG 
    TTTAGGTCGG TGTAATCCAC GCAGACTCTC CACTTACCAT TCTTCTTTTT 
    GACCACGACT GGGTTGGCCA GCCATTCTGG ATATTGTACT TCTTTAATCA 
    GGCCGGCTTT TAGGAGCCGC TCGACCTCGT CTTGGACGGC TTTGGCGCGG 
    TCTGACCCCA GCCGCCTTCG CTTTTGGCGA ACTGGTTTGA AGGTTGGATC 
    CGTATTGAGC TTATGACAGG TTACCTCCGG GGCGATTCCT GTCATATCCT 
    TCGTAGACCA AGCAAAAGAT GACGACCTCG ATTTCAGGAA GGCGATCAGC 
    TCTTCCTTTA TCTCTCCTTC TAGCTCGCTT CCGATACCGA CCGTCCGAGA 
    TGGATCCGAC TCGTCGATGT TGACCTGGAT AATCCTGCAA CTTGGCGCCT 
    TCATTGATTC GCGAGCTGGT CGCTCCGACG GCGCAGCTCG CTCTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 343454 [Map]; Strand: w
      • AT5G01890.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET5729 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTTCACC 
    GGTGAATTAC CGTCTAGCAT TTGGATTCTC ACAAGTTTGT TGCAGCTCAA 
    CATGTCCACC AACTCTCTCT TCGGTTCCAT ACCCACCGGC ATTGGAGGAT 
    TGAAAGTCGC TGAGATTCTT GATCTTAGTA GTAATCTTCT CAACGGAACC 
    CTTCCTTCTG AGATCGGAGG AGCCGTCTCC CTGAAACAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13797201 [Map]; Strand: w
      • AT2G32500.1 - [+] show detail - Stress responsive alpha-beta barrel domain protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET5729 - 3-prime edge 
    AANNTGATNA GACCGTTTTC ATCCCTATTA ACTACCACAA ACCCCAAAAA 
    TCTTATTCCC TTGTTAAATC TCTCTATATT GGGAAGTGAT AAAGAGGCAA 
    CAATGCGAGA GACTTAGTCC GCCACACTCA ATAATGATCC ATCAAGCTTT 
    AGCTCTCCCT CGTCCTACTC TCACCAGAGG TAAAGTTTCG GTTTTTCAAT 
    CTGGGTTTTC GATTCTCAAT CTCACTCTAC TAAATCGAGT GGCGGGCTTG 
    TTGATTTCGG CTCAATTCGA CACATCAATT TGAAAATTGG CCTCTGTTTC 
    AGTAATGCCG TAACATTGTT TGTGACCTAA AGATTCTTCT TTCTGAAATT 
    GACAGGATTT GTGTCTAATG GTGGCGGTAT GTTTGTCCAT CAATGTCGAA 
    CAAAAACCCC TAGGGTTACA TTTTGCGCTG CTGATGATCA GATAGCCAGT 
    TCCAAGTCGA ACAAGACAAG GTTCAGTTTT TGAGAAATTA GCTCCTTTGT 
    GATAGCTTAT GTTAATGTGT GTGTTTAAAG CTGAGATTCT TGAGAAAGTT 
    TCGAACTTTG CATATAGGTT TATGACTCCA CATTATGTTT TCTGATGAAA 
    GTTTTATAAT CTATGTATCA ATGATGTTCC TTAGGAAAGT ANTGGANCAT 
    GTGTGTTTAC TCAAAGCAAA ANATGGTTTA TCTGAGGAAN TAAAAAAANA 
    TATGCTTGAC TATCTTTACA CAACTCAATA CCAAATGANA GGCATTGTTG 
    CTATATCTGT TGGTGAATTG CTTACATATT CCTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 653365 [Map]; Strand: w
      • AT5G02850.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G02860.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -737; Region: promoter
    Flanking Genome Sequence: ET5729 - 5-prime edge 
    TACTTTCTCC CTGTATGAGA CCTTCTCAGG GACTCCACAG ACCGCCTGAT 
    GTCATACAGG TCCGAGCTGT TCAACTTGAC ATTCTGGAGG ATGATGATAG 
    CAGTGATTAC AGCAGCGATG ATGCAAGCTC AGATGATGAG GATTAATCAA 
    CATTGTGATT GATGGTTCTC TGTAAGGTAA TGATTTGACC AATGTTACTG 
    CTAATTCTTG ATCAAGTTTG ATTTTCTACT TGGTTTCGTT TTGTTTAGCA 
    GTGCCTTTAT GTGGATAGAT GTTAGTATAT GCTTCATCGT TATCAGTATC 
    TTTGATGTAT CAAAGTTGTT TCTTACGAAA ACCCTGGATT CTAATTCAGT 
    TTACAGAATT ATTGGTTATC TTTTTTCCAG AATCATTCTT TAGCTTCAAA 
    TTTCAAATTA TTAGTAAAAT TCAGAATGTT CAACTATTGG AGTTATGCAA 
    CTTGACATTT TGGATCGATC TCTCTATACG ACAAAGTAAA ATCCCTCTTA 
    GGTCATACAT ACATATCAGA GGCTCTTTCT GCCCATTTCT TTATTGTACA 
    GTTTATTGTT CCATTTGGGC TTCTAATAAT ATAATGGGTT GACAAAATAA 
    GTAGTAGCCC ATTTAGATCT AACCTGTTGA ATCTGGACT

AT2G01029.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.7e-215 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)
Link
InterPro Scan - TAIR

AT2G32500.1

Model type
Protein coding
Short Description
Stress responsive alpha-beta barrel domain protein
Computational Description
Stress responsive alpha-beta barrel domain protein; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: Stress responsive alpha-beta barrel domain protein (TAIR:AT2G31670.1); Has 68 Blast hits to 66 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01890.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G56370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02850.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med4 (InterPro:IPR019258); Has 258 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 102; Fungi - 36; Plants - 37; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02860.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink).
Link
InterPro Scan - TAIR