ET5741

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET5741

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 25742061 [Map]; Strand: c
- AT1G68560.1 - [+] show detail - alpha-xylosidase 1
  Distance: -4059; Region: intergenic
- AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
  Distance: -4675; Region: intergenic

AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
ATTATGTACC ATAATTAAGT TATTTAAGTA CAGTCCAAAC ACATAAGATT 
TCAAATCTAA AACGTATTTT ATAACATTTT CCAAATTTTG GATTTGATAT 
CTAGGGTTTT GCGAATTGTA ACGTGGCATT GTAATTTTTG TTATGGTGCG 
ATTTATCCTA TAGTTTTATG AGGCTTAAAA AGGCCTCACA GTTTTGAGGA 
TAACATGGGA GTAGAAGACA CTTCACATCA TCTTCATNTC CCTACACAGA 
AGAAAAATGG TAAATAAGAT TCGTTGATTT CCAAAACGAC GAAACACTTT 
AATATGTATA ACAACGGAAG TGTCATTGTT TTTAGGCGTG CACTATCTCT 
ATGTCGATTT GAAATGGACC GTCAAGAAGA AATACAAATT CACTTTAGAA 
ACTACAATTT TGAGTGGCAT GGACCAATCT TTAGGATAAT GACAGTAACC 
AATCTTCAAA CACCAAAAAT TGCAATAATC ATAATGATGG GACACGTTGT 
GTTTTGGTAT CGCACTGGTT ACGTATTTTC TCCACTTTTT CTATCCCTTT 
GATGTTTTTT TTCTACTTCA

3 prime edge [+] show sequence

Chromosome: 4; Position: 94443 [Map]; Strand: w
- AT4G00230.1 - [+] show detail - xylem serine peptidase 1
  Distance: 0; Region: exon3 (CDS)

CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTCAT 
GTGGAGAAAG CTTGGCAGCA AAAGCGTTGA AGGCTTTAGT GTAACTATAT 
ACTTTTCTTT CCTTTGCTTC TTCTTGGCTG TTTTCTCAAG AGACGTTATA 
AATTTGATTA GCAAACAACC AAGTAGAACA TTACTCCATA AAACGTTACG 
CGTTTATATG TTTTAGAGTA TGTGTTATAC ATTGATGCAT GACATGTACC 
TGATATTCAA AGATGAGAGA AGATTGATGT GTGTCTTGAT AGTTTCTTCT 
GTATTATCCG GTCGATCTCC CAAATATATA ATATAGAAAT CCTTTATAAT 
TAAGAATTTC AAGAGTAAAA ATATATTCTC CTTGCAACAT AAAGTTTTGT 
TCAATCTGAT GACAAACAAG CTGGAGAAAC AAAGATTGTG TATTATCATT 
ACCTTTGCAT

3 prime edge [+] show sequence

Chromosome: 1; Position: 25742069 [Map]; Strand: c
- AT1G68560.1 - [+] show detail - alpha-xylosidase 1
  Distance: -4067; Region: intergenic
- AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
  Distance: -4667; Region: intergenic

AGANNTGGAN NCACNGTNTA CCGACCGTTT TCATCCCTAN ATATTATGTA 
CCATAATTAA GTTATTTAAG TACAGTCCAA ACACATAAGA TTTCAAATCT 
AAAACGTATT TTATAACATT TTCCAAATTT TGGATTTGAT ATCTAGGGTT 
TNGCGAATTG TAACGTGGCA TTGTAATTTN TGTTATGGTG CGATTTATCC 
TATAGTTTTA TGAGGCTTAA AAAGGCCTCA CAGTTTTGAG GATAACATGG 
GAGTANAAGA CACTTCACAT CATCTTCATA TCCTACACAG AAGAAAAATG 
GTAAATAAGA TTCGTTGATT TCCAAAACGA CGAAACACTT TAATATGTAT 
AACAACGGAA GTGTCATTGT TTTTAGGCGT GCACTATCTC TATGTCGATT 
TGAAATGGAC CGTCAAGAAG AAATACAAAT TCACTTTAGA AACTACAATT 
TTGAGTGGCA TGGACCAATC TTTAGGATAA TGACAGTAAC CAATCTTCAA 
ACACCAAAAA TTGCAATAAT CATAATGATG GGACACGTTG TGTTTTGGTA 
TCGCACTGGT TACGTATTTT CTCCACTTTT TCTATCCCTT TGATGTTTTT 
TTTCTACTTC AAATCGTTTA GGTATCAATT CATCTCTTCC AA

5 prime edge [+] show sequence

Chromosome: 1; Position: 25742011 [Map]; Strand: c
- AT1G68560.1 - [+] show detail - alpha-xylosidase 1
  Distance: -4009; Region: intergenic
- AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
  Distance: -4725; Region: intergenic

TTCCATCCTA CTTTCTCCCT GAATATCAGT CCCGTCTCTG GGGGAGGAAG 
GATAGGCAAA TGCCCAGAGT CGATAACCAG TTTCAAATTT TTTATTAAAG 
TTAAAAGTCC CAATTTTTCA AAAATAAAAT AAAATTTATT AAGACATTTT 
ATTTTATTAA TAAATTTTAT TTTATTTTGA GTTTTGCCAT GAACTCTATG 
ATGAGTTGAG ACGGACTACG TAATATGTAG AACATTAACA TGGGATTTGT 
GGTGTAAATG TTTTAGAGTT AGAAACTAAA CTAACACTAA AATGAAAATT 
TTGGAAAAAT AAAATTATAA TAGGATATTG AAAATTTTGT CAAACATTGG 
CTTATGCTTA TCAATGTTTT TTAGAATTTA ATTTAACAGT GTAGGGTCTC 
TATAAACGTA TAAATCATCT TTGGCAATAT AATATGGATA TATGTAAGCT 
GATTAAACCA GTGTATGTGA CCAATAAACA GCAATGGATT CACAATAAGG 
TCATATTAAT TTGAACCAAA CCTTTAGGCT AAGAACCAAC CATATGTGTG 
GATCCTCTTC TCATAGACAC TACAGTTTGG GCTCACTTCT TGTATCTGCG 
TAACATTTCG GGCCAATGTT

5 prime edge [+] show sequence

Chromosome: 1; Position: 25742000 [Map]; Strand: c
- AT1G68560.1 - [+] show detail - alpha-xylosidase 1
  Distance: -3998; Region: intergenic
- AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
  Distance: -4736; Region: intergenic

GATCTNCTNT NNATACAGTC CCGTCTCTGG GGGAGGAAGG ATAGGCAAAT 
GCCCAGAGTC GATAACCAGT TTCAAATTTT TTATTAAAGT TAAAAGTCCC 
AATTTTTCAA AAATAAAATA AAATTTATTA AGACATTTTA TTTTATTAAT 
AAATTTTATT TTATTTTGAG TTTTGCCATG AACTCTATGA TGAGTTGAGA 
CGGACTACGT AATATGTAGA ACATTAACAT GGGATTTGTG GTGTAAATGT 
TTTAGAGTTA GAAACTAAAC TAACACTAAA ATGAAAATTT TGGAAAAATA 
AAATTATAAT AGGATATTGA AAATTTTGTC AAACATTGGC TTATGCTTAT 
CAATGTTTTT TAGAATTTAA TTTAACAGTG TAGGGTCTCT ATAAACGTAT 
AAATCATCTT TGGCAATATA ATATGGATAT ATGTAAGCTG ATTAAACCAG 
TGTATGTGAC CAATAAACAG CAATGGATTC ACAATAAGGT CATATTAATT 
TGAACCAAAC CTTTAGGCTA AGAACCAACC ATATGTGTGG ATCCTCTTCT 
CATAGACACT ACAGTTTGGG CTCACTTCTT GTATCTGCGT AACATTTCGG 
GCCAATGTTC TTCTCTCTCA

AT1G68560.1

Model type: Protein coding
Short Description: alpha-xylosidase 1
Curator Summary: Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description: alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G68570.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 1 (TAIR:AT3G54140.1); Has 5938 Blast hits to 5565 proteins in 1029 species: Archae - 0; Bacteria - 2262; Metazoa - 736; Fungi - 385; Plants - 2206; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00230.1

Model type: Protein coding
Short Description: xylem serine peptidase 1
Computational Description: xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link: InterPro Scan - TAIR