ET5741

CSHL Arabidopsis genetrap mutant lines

Original: ET5741

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5741

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25742061 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: -4059; Region: intergenic
      • AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4675; Region: intergenic
    Flanking Genome Sequence: ET5741 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
    ATTATGTACC ATAATTAAGT TATTTAAGTA CAGTCCAAAC ACATAAGATT
    TCAAATCTAA AACGTATTTT ATAACATTTT CCAAATTTTG GATTTGATAT
    CTAGGGTTTT GCGAATTGTA ACGTGGCATT GTAATTTTTG TTATGGTGCG
    ATTTATCCTA TAGTTTTATG AGGCTTAAAA AGGCCTCACA GTTTTGAGGA
    TAACATGGGA GTAGAAGACA CTTCACATCA TCTTCATNTC CCTACACAGA
    AGAAAAATGG TAAATAAGAT TCGTTGATTT CCAAAACGAC GAAACACTTT
    AATATGTATA ACAACGGAAG TGTCATTGTT TTTAGGCGTG CACTATCTCT
    ATGTCGATTT GAAATGGACC GTCAAGAAGA AATACAAATT CACTTTAGAA
    ACTACAATTT TGAGTGGCAT GGACCAATCT TTAGGATAAT GACAGTAACC
    AATCTTCAAA CACCAAAAAT TGCAATAATC ATAATGATGG GACACGTTGT
    GTTTTGGTAT CGCACTGGTT ACGTATTTTC TCCACTTTTT CTATCCCTTT
    GATGTTTTTT TTCTACTTCA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 94443 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET5741 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTCAT 
    GTGGAGAAAG CTTGGCAGCA AAAGCGTTGA AGGCTTTAGT GTAACTATAT
    ACTTTTCTTT CCTTTGCTTC TTCTTGGCTG TTTTCTCAAG AGACGTTATA
    AATTTGATTA GCAAACAACC AAGTAGAACA TTACTCCATA AAACGTTACG
    CGTTTATATG TTTTAGAGTA TGTGTTATAC ATTGATGCAT GACATGTACC
    TGATATTCAA AGATGAGAGA AGATTGATGT GTGTCTTGAT AGTTTCTTCT
    GTATTATCCG GTCGATCTCC CAAATATATA ATATAGAAAT CCTTTATAAT
    TAAGAATTTC AAGAGTAAAA ATATATTCTC CTTGCAACAT AAAGTTTTGT
    TCAATCTGAT GACAAACAAG CTGGAGAAAC AAAGATTGTG TATTATCATT
    ACCTTTGCAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25742069 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: -4067; Region: intergenic
      • AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4667; Region: intergenic
    Flanking Genome Sequence: ET5741 - 3-prime edge
    AGANNTGGAN NCACNGTNTA CCGACCGTTT TCATCCCTAN ATATTATGTA 
    CCATAATTAA GTTATTTAAG TACAGTCCAA ACACATAAGA TTTCAAATCT
    AAAACGTATT TTATAACATT TTCCAAATTT TGGATTTGAT ATCTAGGGTT
    TNGCGAATTG TAACGTGGCA TTGTAATTTN TGTTATGGTG CGATTTATCC
    TATAGTTTTA TGAGGCTTAA AAAGGCCTCA CAGTTTTGAG GATAACATGG
    GAGTANAAGA CACTTCACAT CATCTTCATA TCCTACACAG AAGAAAAATG
    GTAAATAAGA TTCGTTGATT TCCAAAACGA CGAAACACTT TAATATGTAT
    AACAACGGAA GTGTCATTGT TTTTAGGCGT GCACTATCTC TATGTCGATT
    TGAAATGGAC CGTCAAGAAG AAATACAAAT TCACTTTAGA AACTACAATT
    TTGAGTGGCA TGGACCAATC TTTAGGATAA TGACAGTAAC CAATCTTCAA
    ACACCAAAAA TTGCAATAAT CATAATGATG GGACACGTTG TGTTTTGGTA
    TCGCACTGGT TACGTATTTT CTCCACTTTT TCTATCCCTT TGATGTTTTT
    TTTCTACTTC AAATCGTTTA GGTATCAATT CATCTCTTCC AA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25742011 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: -4009; Region: intergenic
      • AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4725; Region: intergenic
    Flanking Genome Sequence: ET5741 - 5-prime edge
    TTCCATCCTA CTTTCTCCCT GAATATCAGT CCCGTCTCTG GGGGAGGAAG 
    GATAGGCAAA TGCCCAGAGT CGATAACCAG TTTCAAATTT TTTATTAAAG
    TTAAAAGTCC CAATTTTTCA AAAATAAAAT AAAATTTATT AAGACATTTT
    ATTTTATTAA TAAATTTTAT TTTATTTTGA GTTTTGCCAT GAACTCTATG
    ATGAGTTGAG ACGGACTACG TAATATGTAG AACATTAACA TGGGATTTGT
    GGTGTAAATG TTTTAGAGTT AGAAACTAAA CTAACACTAA AATGAAAATT
    TTGGAAAAAT AAAATTATAA TAGGATATTG AAAATTTTGT CAAACATTGG
    CTTATGCTTA TCAATGTTTT TTAGAATTTA ATTTAACAGT GTAGGGTCTC
    TATAAACGTA TAAATCATCT TTGGCAATAT AATATGGATA TATGTAAGCT
    GATTAAACCA GTGTATGTGA CCAATAAACA GCAATGGATT CACAATAAGG
    TCATATTAAT TTGAACCAAA CCTTTAGGCT AAGAACCAAC CATATGTGTG
    GATCCTCTTC TCATAGACAC TACAGTTTGG GCTCACTTCT TGTATCTGCG
    TAACATTTCG GGCCAATGTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25742000 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: -3998; Region: intergenic
      • AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4736; Region: intergenic
    Flanking Genome Sequence: ET5741 - 5-prime edge
    GATCTNCTNT NNATACAGTC CCGTCTCTGG GGGAGGAAGG ATAGGCAAAT 
    GCCCAGAGTC GATAACCAGT TTCAAATTTT TTATTAAAGT TAAAAGTCCC
    AATTTTTCAA AAATAAAATA AAATTTATTA AGACATTTTA TTTTATTAAT
    AAATTTTATT TTATTTTGAG TTTTGCCATG AACTCTATGA TGAGTTGAGA
    CGGACTACGT AATATGTAGA ACATTAACAT GGGATTTGTG GTGTAAATGT
    TTTAGAGTTA GAAACTAAAC TAACACTAAA ATGAAAATTT TGGAAAAATA
    AAATTATAAT AGGATATTGA AAATTTTGTC AAACATTGGC TTATGCTTAT
    CAATGTTTTT TAGAATTTAA TTTAACAGTG TAGGGTCTCT ATAAACGTAT
    AAATCATCTT TGGCAATATA ATATGGATAT ATGTAAGCTG ATTAAACCAG
    TGTATGTGAC CAATAAACAG CAATGGATTC ACAATAAGGT CATATTAATT
    TGAACCAAAC CTTTAGGCTA AGAACCAACC ATATGTGTGG ATCCTCTTCT
    CATAGACACT ACAGTTTGGG CTCACTTCTT GTATCTGCGT AACATTTCGG
    GCCAATGTTC TTCTCTCTCA

AT1G68560.1

Model type
Protein coding
Short Description
alpha-xylosidase 1
Curator Summary
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68570.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 1 (TAIR:AT3G54140.1); Has 5938 Blast hits to 5565 proteins in 1029 species: Archae - 0; Bacteria - 2262; Metazoa - 736; Fungi - 385; Plants - 2206; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR