ET5745

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

fusca mutant

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	purple (PATO:0000951)

Original: ET5745

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 6346716 [Map]; Strand: w
- AT4G10180.1 - [+] show detail - light-mediated development protein 1 / deetiolated1 (DET1)
  Distance: 0; Region: exon2 (CDS)

GATCGGGAGA TTCGACATCG TAGAGTGTGT AGCTTGGGAC TAGGTTTTCG 
TAGAAGTGTC TTGCACGATT TACCTATCAT TGAAGGTGAA GAGATAAGCA 
AAAGAGAGAT TGAGATTGAG AGATTGAGAC AGAGAGAGAG ATTTGGGGAC 
TGACGGAAGC GCCGGGAGGA GGAGTTCGAA TCTGACGTTC GAAGACCCGA 
GCGGTGACGT TACCGCTTGT GAACATTTGT TGGCCCAGAA GGGCACGAAT 
AAAGGAAGGT TTTTAGTCTG GTTTTAGTGG TGAAAATGGA GGAGACGATG 
TGAGTGAGAG AGAGAGAGAG AGATACTGGG GCTTTGTTTT GGTTCTGTTG 
ATTTTTCTCT TTTGGGAGGG GGGTTTCTCT CAATCTGTTA ATGGGCCTGA 
TATTGGTGTT TGAAAATGGC CCAATAGCTG CAAAATTGGG TCATTGGCAC 
TTATTGGTAC TACTTCCTCT TTGCACAATT TCTCTTGGTG TATTGCTTTG 
CTTAGTCGGA GCTTAAGTAG GGACATTCAC ATTTTGGATC GGATTTTGGA 
TCGGATT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 15946482 [Map]; Strand: w
  - AT4G33050.3 - [+] show detail - calmodulin-binding family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G33050.4 - [+] show detail - calmodulin-binding family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G33050.1 - [+] show detail - calmodulin-binding family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G33050.2 - [+] show detail - calmodulin-binding family protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: ET5745 - 3-prime edge
```
AGTCAACGCC TAACACTTTG AATGGAAGAA ACTGTGAGAG AATCCAAATC 
AAGAAACCTA CAGTTACTCC ACCAGAGCCA TTTGTGTTCA TC
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 6346905 [Map]; Strand: w
- AT4G10180.1 - [+] show detail - light-mediated development protein 1 / deetiolated1 (DET1)
  Distance: 0; Region: exon2 (CDS)

CTCATAGTCT ATCGTCCTTC TTGGCTCACT TACTCCACAA CCGATGATTC 
CACAACCACC CTACCTCCTC TACCTCGCCG TGCTTCGAAA TTCGACAGCT 
TTTTCACTCA ACTCTACTCA GTCAATCTCG CTTCATCTTC TTCGACGATN 
TGNAAAGACT TCTTCCTCTA TCACCAAACT CGGGGGGGGG GGCTTTTCGC 
TACTTCAACA GCTCAGATCC ATGATTCATC ATCTCCTTCT CCCGCCGCTG 
TTCCTGGTGT TCCTTCCATT GATAAGATTA CTTTCGTACT TCTTCGATTA 
GATGATGGTG TTGTTCTTGA TAAGAGGGTT TTTCTTCATG ATTTCGTTAA 
TCTGGCTCAT AATCTGGGTG TGTTTCTTTA TGATGATCTT TT

5 prime edge [+] show sequence

Chromosome: 4; Position: 6346906 [Map]; Strand: w
- AT4G10180.1 - [+] show detail - light-mediated development protein 1 / deetiolated1 (DET1)
  Distance: 0; Region: exon2 (CDS)

TCATAGTCTA TCGTCCTTCT TGGCTCACTT ACTCCACAAC CGATGATTCC 
ACAACCACCC TACCTCCTCT ACCTCGCCGT GCTTCGAAAT TCGACAGCTT 
TTTCACTCAA CTCTACTCAG TCAATCTCGC TTCATCTATC TCGACGATNT 
GCAAAGACTT CTTCCTCTAT CACCAAACTC GTGGGGGGGG GCTTTTCGTT 
TTTTTTTCAG CTCAGATCCA TGATTCATCA TATACTTCTA CCGACGCTGT 
TCCTGGCGCT CCTTCCATTG ATAAGATTAC TTTCGTACTT CTTCGATTAG 
ATGATGGTGT TGTTCTTGAT AAGAGGGTTT TTCTTCATGA TTTCGTTAAT 
CTGGCTCATA ATATGGGTGT GTTTCTTTAT GATGATCTTT TAGCGATTTT 
GTCGTTGCGT TATCAGAGGA TTCATCTTCT TCAGATTAGA GATTCTGGTC 
ATCTTGTTGA TGCTCGTGCT ATTGGTTACT TTTGTCGTGA AGATGATGAG 
CTTTTCCTCA ATTCTAGCTC TCAGGTAAGC AAAGTTTTTA CAGTATCTTT 
CTCTGGAGTA GATAAAGTTT TGAGCTTTGT GAGGTTTTTG ATTGTTAGGC 
AATGATGAGT CAAGATAAGA GTAAACA

AT4G10180.1

Model type: Protein coding
Short Description: light-mediated development protein 1 / deetiolated1 (DET1)
Curator Summary: Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.
Computational Description: DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33050.1

Model type: Protein coding
Short Description: calmodulin-binding family protein
Computational Description: embryo sac development arrest 39 (EDA39); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 290 Blast hits to 243 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 98; Plants - 184; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33050.2

Model type: Protein coding
Short Description: calmodulin-binding family protein
Computational Description: embryo sac development arrest 39 (EDA39); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33050.3

Model type: Protein coding
Short Description: calmodulin-binding family protein
Computational Description: embryo sac development arrest 39 (EDA39); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 379 Blast hits to 276 proteins in 60 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 104; Plants - 246; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G33050.4

Model type: Protein coding
Short Description: calmodulin-binding family protein
Computational Description: embryo sac development arrest 39 (EDA39); FUNCTIONS IN: calmodulin binding; INVOLVED IN: polar nucleus fusion, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR