ET5830

CSHL Arabidopsis genetrap mutant lines

Original: ET5830

Phenotypes

Morphological phenotypes

Original description

  • seedling has 3 cotyledons
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • present in greater numbers in organism (PATO:0000470)

Original: ET5830

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22619841 [Map]; Strand: w
      • AT3G61120.1 - [+] show detail - AGAMOUS-like 13
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET5830 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATNATGG GTAGCCGTAG 
    ATCTATAATC CATTACGCAG ATATATCTTC CCAGAGATTT TTGTGTAATT 
    AGAATTTCCT TTAGACATGC ATTAAAAGTT AACACAGAAC TTAAGGTTTT 
    CGTTCTTTGG TTTTGAATTT AAGCAAATTC AGATTATTAG TTAAAATATC 
    TTGTGGTTTC TTTTGTTTTA TAAACTGTAG AGTTGGCAGA ACCATTGAGA 
    GGTACTATCG CTGTAAAGAC AATCTTTTGG ACAATGATAC GCTTGAAGAT 
    ACTCAGGTCA ATCATTTTCT TTCTTAAGTA TGTTCATTTT ATCTTTATAT 
    ATATACGGAA TTTGACCTTT GTTCATTCTA AGTGTATACA TAGTCAAACT 
    AACTATTATA TTATAACGAT GTATAAAATA AATAGAGCTA AGATAAATTG 
    TAGTTAATCT TCTGCTTTTT GGTGCAGGGC TTGCGTCAAG AGGTGACAAA 
    GCTCAAATGC AAATACGAAT CTC

AT3G61120.1

Model type
Protein coding
Short Description
AGAMOUS-like 13
Computational Description
AGAMOUS-like 13 (AGL13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 6 (TAIR:AT2G45650.1); Has 7229 Blast hits to 7228 proteins in 913 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 307; Plants - 6214; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR