ET5882

CSHL Arabidopsis genetrap mutant lines

Original: ET5882

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5882

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 140954 [Map]; Strand: w
      • AT4G00320.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET5882 - 3-prime edge 
    GTTACCGACC GTTTTCATCC CTATATATGA TTACTCACTT ATCAATATCT 
    GAGTAGAAAT TTAATAGATT AGGAGAAAGA TGTGATTAAC CTTAAGAGTA 
    TCTTCAGTCA AGTAGAGAAT CGTGACATTG CATATTCCCA TGAAAAGCTT 
    TGTTACATTA TTATTGTCAT TTTCAATCTG TTTAGAGGTC TTACAAAGAC 
    CAATACTAAC TTTAACAAGC GAGTCAAACC TCACTTGTTC ATACTTGTCC 
    GCAATTGTAT CCAAGTACTC TAAGTAGAAT AGATTTGGAA TATCAAATGA 
    CAATAACACG ATCGGTTTAA AATTTTTAGC CTTCATAAAA TTTTCAAAAC 
    GAGAAAATTT TAGTATCTTG AGGGTTCGGA CAGAAACACT CACAAAGCAA 
    GGTTCAGGTT CTGAAGATTC TTTCCATATC AAATTCATCA GCAATAATTC 
    TTCTC

AT4G00320.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G41830.1); Has 1728 Blast hits to 1676 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR