ET5926

CSHL Arabidopsis genetrap mutant lines

Original: ET5926

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5926

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET5926 - 5-prime edge
    CCTTGTGCTT CTTCTCTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20144152 [Map]; Strand: c
      • AT1G53940.1 - [+] show detail - GDSL-motif lipase 2
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET5926 - 5-prime edge
    CATACGCTCC CATGTGCAAG AATCCAAACT TCCTTCCTCC AATTTTATAC 
    ACTTCCTAAG AACAGAAACA CAAGCTCACA TTAACTGAGC ATCAACCTTG
    TGCACA

AT1G53940.1

Model type
Protein coding
Short Description
GDSL-motif lipase 2
Curator Summary
Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance
Computational Description
GDSL-motif lipase 2 (GLIP2); FUNCTIONS IN: lipase activity, arylesterase activity, carboxylesterase activity; INVOLVED IN: response to jasmonic acid stimulus, response to ethylene stimulus, defense response to bacterium, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: seedling, stem, cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL lipase 1 (TAIR:AT5G40990.1); Has 3238 Blast hits to 3145 proteins in 120 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 27; Plants - 3095; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR