ET5955

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET5955

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 660092 [Map]; Strand: c
  - AT5G02870.2 - [+] show detail - Ribosomal protein L4/L1 family
    Distance: 359; Region: intergenic
  - AT5G02880.1 - [+] show detail - ubiquitin-protein ligase 4
    Distance: -1972; Region: intergenic
Flanking Genome Sequence: ET5955 - 3-prime edge
```
TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCTG TAACTAGTGC 
ATTGTTTGGA CTTGGCTCTT ACCCTTACGA CGACGATTTT TCCTTGCAAA 
TGTTTAGAAT TCAGCAGCAG GGGACGATGG TGTATGCAGA TCACGCTTGA 
CGCTTTGGAA AACTGCGATC TTTTGCTCGC TTTTGGGGTT GAAGGTAAGG 
CCTTCCGCCC TTCCCATTCC CTAGCAAAGC GAAAGCGAAA GCTAAAATTG 
T
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 659970 [Map]; Strand: c
- AT5G02870.2 - [+] show detail - Ribosomal protein L4/L1 family
  Distance: 237; Region: intergenic
- AT5G02880.1 - [+] show detail - ubiquitin-protein ligase 4
  Distance: -2094; Region: intergenic

CCTGTAAGTT GGACAAATCT GTTCAAGTCA TCGATCGAAG TCAAAGAGCA 
ACCTTTTCCA ACATACAAGC AAAGGCTGCT TATAATTTTA TCCCACTGTA 
TAAGAAAACT TGAGGCTGAA GTAAGACAAC ACATAGTTCG GGACTAAAGG 
GCCTGAGGCA CGTATTTTCG ATTGGTTGGA GTCAAGATGG ACTATCTACA 
TTATTCGATT GAGTGTAGAG TTGTGTGCAA TAACTAATAA AGTTGAAGTT 
CCAGTTATTC TTCTATTNCG ACGANGCTTG TTTGATAAGA TGATCATCAT 
CAAATATTCA AATGGAGGAA TTTGAATAGC GAGTAAAGAG CACTAAGGGA 
AACAGATTGA AAAGAGTTTG AAAAACACCA TCATAGTTCT TAAAAATCGT 
CTTACCAACT CAACAACATA AAATCCCAGA TAAATCCAAT ACAAACGAAG 
AACATAAATC AGAAAACCAA AATCTTTGCC TAGATATAAG AGACTTTGCG 
ATGACGAGAG CATCATTACT GACTAGCGC

5 prime edge [+] show sequence

Chromosome: 5; Position: 659967 [Map]; Strand: c
- AT5G02870.2 - [+] show detail - Ribosomal protein L4/L1 family
  Distance: 234; Region: intergenic
- AT5G02880.1 - [+] show detail - ubiquitin-protein ligase 4
  Distance: -2097; Region: intergenic

CTGTAAGTTG GACAAATCTG TTCATTTCAT CGATCGAATC AAAGACAACC 
TTTTCCAACA TACAAGCAAA GGCTGCTTAT AATTTTATCC CACTGTATAA 
GAAAACTTGA GGCTGAAGTA AGACAACACA TAGTTCGGGA CTAAAGGGCC 
TGAGGCACGT ATTTTCGATT GGTTGGAGTC AAGATGGACT ATCTACATTA 
TTCGATTGAG TGTAGAGTTG TGTGCAATAA CTAATAAAGT TGAAGTTCCA 
GTTATTCTTC TATTTCGACG AGGCTTGTTT GATAAGATGA TCATCATCAA 
ATATTCAAAT GGAGGAATTT GAATAGCGAG TAAAGAGCAC TAAGGGAAAC 
AGATTGAAAA GAGTTTGAAA AACACCATCA TAGTTCTTAA AAATCGTCTT 
ACCAACTCAA CAACATAAAA TCCCAGATAA ATCCAATACA AACGAAGAAC 
ATAAATCAGA AAACCAAAAT CTTTGCCTAG ATATAAGAGA CTTTGCGATG 
ACGAGAGCAT CATTACTGAC TAGCGCCAAG CCACTTGGTG AAGTTATCGA 
ACTCGGTGTA GTCACTGTCT GAAATCATAG TCTGATACCA AGCCTTGCCT 
GCTGC

AT5G02870.2

Model type: Protein coding
Short Description: Ribosomal protein L4/L1 family
Computational Description: Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT3G09630.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02880.1

Model type: Protein coding
Short Description: ubiquitin-protein ligase 4
Curator Summary: encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
Computational Description: ubiquitin-protein ligase 4 (UPL4); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: HEAT repeat ;HECT-domain (ubiquitin-transferase) (TAIR:AT4G38600.1); Has 5635 Blast hits to 5003 proteins in 272 species: Archae - 0; Bacteria - 11; Metazoa - 3196; Fungi - 992; Plants - 513; Viruses - 0; Other Eukaryotes - 923 (source: NCBI BLink).
Link: InterPro Scan - TAIR