ET5956

CSHL Arabidopsis genetrap mutant lines

Original: ET5956

Phenotypes

Morphological phenotypes

Original description

  • possible ethylene mutants
Anatomical entity
/structure development stage
Phenotypes
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)

Original: ET5956

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET5956 - 3-prime edge
    TGACTGGCGA TGCTGTCGGA ATGGACGATA TCCCGCAAGA GGCCCGGCAG 
    TACCGGCATA ACCAAGCCTA TGCCTACAGC ATCCAGGGTG ACGGTGCCGA
    GGATGACGAT GAGCGCATTG TTAGATTTCA TACACGGTGC CTGACTGCGT
    TAGCAATTTA ACTGTGATAA ACTACCGCAT TAAAGCTTTT GCCATTCTCA
    CCGGATTCAG TCGTCACTCA TGGTGATTTC TCACTTGATA ACCTTATTTT
    TGACGAGGGG AAATTAATAG GTTGTATTGA TGTCGGACGA
  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET5956 - 3-prime edge
    CGAAGCGAGC AGGACTGGGC GGCGGCCAAA GCGGTCGGAC AGTGCTCCGA 
    GAACGGGTGC GCATAGAAAT TGCATCAACG CATATAGCGC TAGCAGCACG
    CCATAGTGAC TGGCGATGCT GTCGGAATGG ACGATATCCC GCAAGAGGCC
    CGGCAGTACC GGCATAACCA AGCCTATGCC TACAGCATCC AGGGTGACGG
    TGCCGAGGAT GACGATGAGC GCATTGTTAG ATTTCATACA CGGTGCCTGA
    CTGCGTTAGC AATTTAACTG TGATAAACTA CCGCATTAAA GCTTTTGCCA
    TTCTCACCGG ATTCAGTCGT CACTCATGGT GATTTCTCAC TTGATAACCT
    TATTTTTGAC GAGGGGAAAT TAATAGGTTG TATTGATGTT GGAC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23279624 [Map]; Strand: w
      • AT5G57480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET5956 - 5-prime edge
    GGNNGTNCCN TNNCCNTATC TCNATCCTTT GGNCCTTTGC NCATTTCCAA 
    AGTCGGGCCC CGGGGCCANT TTATAATTCC TATTCTTAAT CAAAGCCTCA
    CTTACATGNA GCAGGAGTCN TCTCAGCCTT CTCCACAACC ATCTCCATCT
    CCTTCAAAAC GTCGCCGTTT ATATCTTCCA CCCCATACCC CAAATAATTC
    TTCAACAAAA TCTTCAACGA TGGGAAGTTA CAAAAACTCA TGTAGATATG
    CATATCCATT CTCCCACTTC TAAGCAATGC AGGATCAAGC TTCTCTATAT
    GATTGGTCGT AAACACAAAG ATCCTCTCAC TTCCACAACA AGACCAAAGC
    CCATCTGTAA AATTCAACAA ACCCGACAAC GTTATAGTAT TCCCATTACC
    ACCTTCCTCT CCCGAACCAC CCGAACCTGA ACCCGAACCG TTTCTTCTCT
    CTCGACGAA

AT5G57480.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink).
Link
InterPro Scan - TAIR