ET60

CSHL Arabidopsis genetrap mutant lines

Original: ET60

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET60

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5237295 [Map]; Strand: w
      • AT1G15210.1 - [+] show detail - pleiotropic drug resistance 7
        Distance: -722; Region: promoter
      • AT1G15215.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: -770; Region: promoter
      • AT1G15215.3 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: -770; Region: promoter
      • AT1G15215.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding tra...
        Distance: -807; Region: promoter
    Flanking Genome Sequence: ET60 - 3-prime edge
    GACCGTTACC GACCGTTTTC ATCCCTAATA ACGAGTTACT TTGACATTTG 
    TAGATTGTGT GTATTTGGTA CGAGGTCTAC TAGTAAGTCA TAACCAAATA
    TAACTAATCG TAGTAGACTA ATTCAATTTC TTACATAAGT CCCAAATTTT
    CTATACCTGT TCTGCACTAA TCACTCCTCT CATTCTTCTC TCTCGA

AT1G15210.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 7
Computational Description
pleiotropic drug resistance 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1); Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218; Bacteria - 309544; Metazoa - 9443; Fungi - 7090; Plants - 6323; Viruses - 4; Other Eukaryotes - 43866 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15215.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15215.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15215.3

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR