ET6007

CSHL Arabidopsis genetrap mutant lines

Original: ET6007

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6007

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5727624 [Map]; Strand: c
      • AT3G16810.1 - [+] show detail - pumilio 24
        Distance: -4; Region: promoter
    Flanking Genome Sequence: ET6007 - 3-prime edge
    GACCGTTTTG AAATAGATAG GCAAGGGTTT TACAGTTTCT AGGGTTTTTG 
    AGGAAGAAGA GAGACGGCGA TACAGTTTTG TTTGGCGGAA TTTGGACACC
    AAGTACCAAT TACCAAAATT AAGGCTTTTT TCTTTGAAAT TACATCTTTG
    CCATTGGCAC AACTGGATTA GTCCGCTCTG TTTTTTTCCG GTTTAACTTG
    TGGAAATTTC ATTGGTTAAT TTAACCATCT CTGATTTGTA TTTCATAATG
    TTGTTGATTC TTGTGAAGCA AAATCCATTC TGATGAAGAA TCTCTATTTG
    CACCCAATAG TCAAAGACCA ACAATGGTCG ACATGTATAC AAATTAATAA
    CCAAAGATGA CAAAAGAAAA GAGTAAATAC ATATAGATTA GGCATTGTAA
    ATGGACTAAT TAATCAAATA TGGTTTGTTG TCTCTTGCAA GTTGCTAAAA
    CTGCACTGAA CTTGGAACAT AAGAGAACAC AAATGGATAA CCATTTCTGT
    CTCTAGATCC TCCCAGTTCC ACTTCTTTGA AATATCCATC CTCTCCAATG
    AAATATCCTA AGTTGCGAGA ACGCGTCTCT TTGTCTTTAT CC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5727468 [Map]; Strand: c
      • AT3G16810.1 - [+] show detail - pumilio 24
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6007 - 5-prime edge
    ATGTCTTCCA AAGGTCTGAA ACCTCAGAAA TCAACCAAGA GGAAGGACAC 
    CGATAGCTCT GCCAAATTCG ATTCTCTAAA ATCAAA
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET6007 - 5-prime edge
    AAGGAACCGA TAGCTCTGCC AAAT

AT3G16810.1

Model type
Protein coding
Short Description
pumilio 24
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 24 (PUM24); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 2337 Blast hits to 1306 proteins in 237 species: Archae - 0; Bacteria - 1; Metazoa - 1209; Fungi - 478; Plants - 404; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR