ET6008

CSHL Arabidopsis genetrap mutant lines

Original: ET6008

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6008

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12819915 [Map]; Strand: w
      • AT2G30032.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -261; Region: promoter
    Flanking Genome Sequence: ET6008 - 3-prime edge 
    GACCGTTTTC ATCCCTACTC AACGTGATCC TTGAGGATAT GAAAAAGAAA 
    TGTAGTTTTC ATTTGAAATG CTTATAATTC CACAATAATG TTGACCAACA 
    AAAAAGTTCA TGAATAATCA TTTTCAAATA CTAAATTCAT GAGTTGACAA 
    AACACTAGTT AGTAATTAAT TAATTTATTA AAATTATTAA ATACTTTTTC 
    CTGCTTCGAT ACACTTGCCA TCTAATTACC TATGGTATTT ACTTAATAAA 
    AAATACGTCG CTTTATGAAA AAAATCCGCC GCAGCTTATC GCATATAAAG 
    ATAGATATAT ATTTATGTTA CGAAAAATTA TTTTATTTGT TTGCTTCTGG 
    GAAGATCTCT GCCCTTCCGT GAACGTGAAG TACTATATTA ACGGTCCACC 
    ACTTGTATGG ATATCCTTTA GATTAGAATC CAAAAAATAA GATATTATTT 
    TAAAGATTTT AAAGGACCCA TACCATATTA CCAAGTTACA GATCGAGACA 
    ATCCACTTGG AAAACATATT AGACATTGCA AGTGCAACAT GTCATTCATT 
    GGTACTAAAC TTTAATGTTC TTCTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15552197 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: ET6008 - 5-prime edge 
    CCGAATCGAC TCGTATTTCG AACGTATCTG ACACGTGTCA AATCGCCGCG 
    TCTGTCCGCG CGCGTGAACC TCACGACCCG ATCCGTCTCG TAGGTTTAAT 
    GATGACCTCG TAGGTTTGTC GCCCAATCGC CTCTATTTAT ATTAGATTAA 
    ACCCTCGGGA AATCATTTTC CGCCGCTTGC AAGAAGAATC TAAGGTAGCT 
    CTCGCTCTCT CCTCTGCGAA TTATTTTGTA CTCTCGATTC TTTATCGATT 
    TTTCCGGCAA TGGGTAAGGT TGTTCTTCTC TCTCGA

AT2G30032.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR