ET6017

CSHL Arabidopsis genetrap mutant lines

Original: ET6017

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6017

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23452249 [Map]; Strand: c
      • AT1G63230.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: ET6017 - 3-prime edge 
    ATTTTTCAAA TTTTTAAAAC TTGCTTACCA TAAAAATTCT GGATTTTATT 
    TATCCAGTCT AATAATCTAC AGGCTGATCA TAGTAGCCTG CTTAGGGATT 
    TGATAAGTAG TTTAAGGTTT TATCTTGTGG CTTCTACTCT CTCGACAAAA 
    NANNAACTTG TTGGATATGC TTTCTTAATC ATTTGTTAAG TTCATCTTTA 
    TACTTTGTTT TGATGTCTCT ATTGAAGATT GCTTCTGTCT TTCTTTGGGG 
    CTTCTGCTGA GTCAGGTTCG CGTCTATTTG GACACATGTA GACTGGATTG 
    AATTGTTGCC GATTTGGACT ATGTATTATA ACAATACTGC AT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET6017 - 5-prime edge 
    CATCAATCCA CAAATCTAAA ACCTTTTGTT AAAACCCTAA TTGAACATTT 
    AAAAAAAAAA AAATTTTTTG GGTTAAAGGA ATTAAGGGTT GGGTTTTTAA 
    AACCCAGGAA TTTTAATTCC CCCCCTTGGG GCCCACCTAT TTTTTAACCA 
    ATGGGCCCCC TTTTTAAACC ATTAAAATTT TTTTTTCAAA AAACCAATTT 
    TTTTACCTTT TCTTTTAAAG GAACCAGGAT TCCTGGCCAC TAGGGAGGGG 
    CGGTTCAAAA AAATTGGGGG GCCAAACCAA AAAAAAATTT TTTTAAGGGT 
    TTTTTAAAAA ATTTTAAATT TTGGGAACCT TTTTAATAAA ATTTATTTTT 
    TTGGGGAACT TTTTAAAAAT TTTTTTTCCT TCAAAATTTT TGGAAAAAT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET6017 - 5-prime edge 
    AAATCTAAAA CCTTTTGTTA AAACCCTAAT TGAACATTTA AAAAAAAAAA 
    AATTTTTGGG GTTAAAGGAA TTAAGGGTTG GGTTTTTAAA CCCCGGGAAC 
    TTTAATTCCC CCCATTAGGG CCCACCAAAA TTTAAAAAAA AGGGCCCCCT 
    TTTTAACCCG GTAAAATTTT TTTTTCCCCA AACCAATTTT TATACCTTTT 
    TTTTTAAAGG AACCAGAAAT CCAGGGACTT AGGGGGGGGC GGGTCAAAAA 
    AATTGGGGGG CCAACCCAAA AAAAAATTTT TTTAAGGGTT TTTTAAAAAA 
    TTTTAAATTT TGGGAACCTT TTTAATAAAA ATTATTTTTT TGGGGAACCT 
    TTTAAAAATT TTTTTTCCTG CCAAATTTTT GGAAAAATT

AT1G63230.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63630.1); Has 57300 Blast hits to 14267 proteins in 286 species: Archae - 3; Bacteria - 43; Metazoa - 749; Fungi - 672; Plants - 54190; Viruses - 0; Other Eukaryotes - 1643 (source: NCBI BLink).
Link
InterPro Scan - TAIR