ET6041

CSHL Arabidopsis genetrap mutant lines

Original: ET6041

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6041

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24993863 [Map]; Strand: w
      • AT1G66970.1 - [+] show detail - SHV3-like 2
        Distance: 0; Region: intron5 (CDS)
      • AT1G66970.2 - [+] show detail - SHV3-like 2
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET6041 - 3-prime edge
    TACCGACCGT TTGCACCCCT ACTTTTGAGA TTACATAACT TGGAGTTATA 
    ATAACTACTC TCTTATTTTT TTTGTGCAAC TGCTATTTCA AACCCCTTCA
    GGGTTTATAG TATTTTTAGG AATCCGAGAG AGAAAAATTC AGGGACGCTC
    ATTTCCCTTT CTCAATTCCT AGACTTGGCA AAAAATTACA CTTCTCTCTC
    CGGTGTTATG ATCAGTGTAA AGGTGAGTTC TTAATGTACC TCTTAGTCTT
    AAGATTTTAT CAATCCGAC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24993863 [Map]; Strand: w
      • AT1G66970.1 - [+] show detail - SHV3-like 2
        Distance: 0; Region: intron5 (CDS)
      • AT1G66970.2 - [+] show detail - SHV3-like 2
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET6041 - 3-prime edge
    TACCGACCGT TTTCAGCCCT ACTTTTGAGA TTACATAACT TGGAGTTATA 
    ATAACTACTC TCTTATTTTT TTTGTGCAGC TGCTATTTCA AACCCCTTCA
    GGGTTTATAG TATTTTTAGG AATCCGAGAG AGAAAAATTC AGGGACGCTC
    ATTTCCCTTT CTCAATTCCT AGACTTGGCA AAAAATTACA CTTCTCTCTC
    CGGTGTTATG ATCAGTGTAA AGGTGAGTTC TTAGTGTACC TCTTAGTCTT
    AAGATTTTAT CAATCCGACC GTTATATCTT CTATGTTTTT TTTTGGTTTC
    CCCCAAAATG CAGCATACTT GAAAAAAAAC CAAGGGCTTG ACTTGGTTAA
    AGCGGTTCTC GATACACTCA CCGAAGCTGG TTACGGCAAT GGAACAACCA
    CTACAAAGGT CATGATTCAT TCAACAAACA GCTCATTTCT ATTTAACTTC
    AAAAATCAAA GCAATTTCAA AACTGTCTAC AAAATTAAAA AAACCGTTAG
    TGATATTCTT GACTATGGT

AT1G66970.1

Model type
Protein coding
Short Description
SHV3-like 2
Computational Description
SHV3-like 2 (SVL2); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to plasma membrane, apoplast, chloroplast, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: suppressor of npr1-1 constitutive 4 (TAIR:AT1G66980.1); Has 1600 Blast hits to 1093 proteins in 369 species: Archae - 0; Bacteria - 1195; Metazoa - 10; Fungi - 0; Plants - 324; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66970.2

Model type
Protein coding
Short Description
SHV3-like 2
Computational Description
SHV3-like 2 (SVL2); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: suppressor of npr1-1 constitutive 4 (TAIR:AT1G66980.1).
Link
InterPro Scan - TAIR