ET6089

CSHL Arabidopsis genetrap mutant lines

Original: ET6089

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6089

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7294151 [Map]; Strand: w
      • AT1G20930.1 - [+] show detail - cyclin-dependent kinase B2;2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6089 - 3-prime edge
    CTGAATATGA AATCTTTAGG GTTCCTTATC TTATCCGAAT ACTANAAAAT 
    GTCAAAGTAG AAGCTCTGTG TTGTGATCTC AGTTTCCGCT ATTTTTGTGG
    TGATTGCATT TCTACTGAGA GATTATTGTT ATGATGATTA TCTTCTTCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662938 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -321; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6089 - 3-prime edge
    CCATGGGGTC TCCTCTTCCA TAGCTCTCAC TTATGGCTTT CGCCATATAA 
    GAAGATCCAC CTTCCGTATT TTCGCCACCT CTGACGGATT AGAACCCAAG
    GACGACCCGC CGGAATCTCC TCTCCCTTCC TCATCCTCTG CTCTCGGTAA
    AGATTTGAAA AAGGTCCGCC TTATTTCTAT ATCATTTACG ATTTTTCTGT
    TGAAACCATA GGAAGACTTG AAAATGAATA TGCACCATGT TAGATTGGTC
    TCTAGTGCTT GAACCTGTCG AAAGAGTTGC TCTAGCTTAT GACTTTTCGA
    TTCAAACAGG TTGTTAACAA GACTGCTGCA ACCTTTGCCC CTTGAGCTTC
    CACCGCCAGT AAAAACCCTG CTCTCCCTGG AACTACTCTT TACAGAGTTT
    TTGAGGTTCA AGGCTATGCA TCGATGTTCC TCGGAGGTGT CCTTTCTTTC
    AACCTCCTCT TTCCCTCCTT CGAACCTGAT TTATGGAGGT TGATGGGCAT
    GTGGTCCATT TGGATGTCCA GTATGTCTCC TTCTCTACTT TCTTCTAACT
    TTATTTATTC CAAGGCTGCC TTTTTGCCCC TAATCCTTTA CTTTCTTTCC
    ACCTATTCCT TCTCTTCGGG CAC
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23642505 [Map]; Strand: c
      • AT1G63730.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET6089 - 5-prime edge
    CTTCAGAATC CTTAGAGATT GTAGTGTTTA GTTTGTTTGA TACATCTCTA 
    GCAATCGTCT CAACCATCTT CGATTCCTTG TCCCTAACAA GAACGGAAAA
    TTCATAGAGT TTATCAAATA GTCATGTGAA ATGTTGTAAC TTCTATTGTA
    GAAATCTGAA CCTATCTTTA TTACGTAGTT AGCTAAAATA TTGTTTTTCA
    CATCAAAGAC AGGAGTCCTA TGTTGCTAAT ACAGTAACTC ATGAACCTAT
    CACATCTTTT AGATTCACAA AGAAAATTTC CTTAATCGGA TTTAAGAAGG
    CATGAATTCC AAATTAATTG AACGAAATCA AACAAACCAG TTTAAGAAGT
    GCTCTCCGGC TATGTTTCCC ACATCGTTCA AAGCTTGGCT CCATTTTTGC
    TTCTCCTCCT CCGTTTTACG AGCACAAGTT TCACTGAATC GGATCCCAAA
    TTCTCCGGTT TGTTTACGCA CATCAGATGG ATCAACTCCG TAAAAGACAG
    TCATCACTAT CTGCCCAATA TCTTCCTTGC ACTTCAAAAT CTCCAACAGC
    TCATCCAAAC ACCA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23642471 [Map]; Strand: c
      • AT1G63730.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6089 - 5-prime edge
    GTTTGATACA TCTCTAGCAA TCGTCTCAAC CATCTTCGAT TCCTTGTCCC 
    TAACAAGGAA CGGAAAATTC ATAGAGTTTA TCAA

AT1G20930.1

Model type
Protein coding
Short Description
cyclin-dependent kinase B2;2
Curator Summary
Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.
Computational Description
cyclin-dependent kinase B2;2 (CDKB2;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;1 (TAIR:AT1G76540.1); Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93; Bacteria - 11427; Metazoa - 41458; Fungi - 12141; Plants - 24398; Viruses - 437; Other Eukaryotes - 19080 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G63730.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63740.1); Has 17590 Blast hits to 13527 proteins in 497 species: Archae - 17; Bacteria - 935; Metazoa - 1465; Fungi - 25; Plants - 14797; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR