ET6093

CSHL Arabidopsis genetrap mutant lines

Original: ET6093

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6093

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21963092 [Map]; Strand: w
    Flanking Genome Sequence: ET6093 - 3-prime edge
    GACCGTTTTC ACCGTTACTC TCTTTGATAA GCTCCATGTC TCTCTCTTCT 
    CTCTTTCTCT TTTGGTTTCT CAAGATTTTC ATGAGCTACT GTTGAATGTA
    TAACTCTACA TATGGTACTG TCAACTGGAC TAGGAAAGCA TGAGTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21963219 [Map]; Strand: w
      • AT3G59420.1 - [+] show detail - crinkly4
        Distance: -178; Region: promoter
    Flanking Genome Sequence: ET6093 - 5-prime edge
    GCATTAAATG CGACCAAAAC TGCTGCTTCT GAATAATGGC AAATGTAGGT 
    GACGCCATTT AATATTAAAG AGTTAATGTT ACCAAATTTT CTCTTCTTGC
    TTTCTCGTTT TTTTTTTACT TTTTTATTAA TTTATTCGAA TTTTTCCCCA
    TTCTTCCCAA ATTTGAGCAA TCTAACCCAA AAAGTTTTAT GGGAAGTTTC
    CATCTTTATG CTCATTGGGG TTTAACCCAA GATTCAATGA GACATTAACT
    TTTTTTCATT CCTCCAAAGC TTCCTTTTTC CTTTTTTAAT AATCTTTTTA
    ATGGGGGTTT TACTTTCCCC GTTGCCGTCG GGGTTTGGTT TCCACCAATC
    CAAAACATTT TAAATCAATC TTTTAACTTA TATTAATAAA TGGGTTGGGA
    GGGTTCATGC CCATATTTTT AGTTCAACTT TGTTTTT

AT3G59420.1

Model type
Protein coding
Short Description
crinkly4
Curator Summary
Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes.
Computational Description
crinkly4 (CR4); CONTAINS InterPro DOMAIN/s: TNFR/CD27/30/40/95 cysteine-rich region (InterPro:IPR001368), Protein kinase, ATP binding site (InterPro:IPR017441), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 2 (TAIR:AT2G39180.1); Has 114508 Blast hits to 112789 proteins in 4411 species: Archae - 95; Bacteria - 12671; Metazoa - 42599; Fungi - 9662; Plants - 32482; Viruses - 390; Other Eukaryotes - 16609 (source: NCBI BLink).
Link
InterPro Scan - TAIR