ET6113

CSHL Arabidopsis genetrap mutant lines

Original: ET6113

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6113

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13098627 [Map]; Strand: w
      • AT1G35535.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET6113 - 3-prime edge 
    ACTTAGTATC AACATTGCTT AAACTTCATC ATGTACCTGA ATCTGAAGAT 
    TACTAAGATC TGAAATCATC TTTAGGAATT CATCAACATT CTCTTCAAGC 
    GTCTTTGAAT CTTGCATCAT GTAGTTATAG ACTTTAAGTT GCAGATAAAC 
    TTGATTTGGA AGAGATTTTA CCAGATACAA CCTATCAAGC GTTGCCCATG 
    CTTCAGCAGT TAACTTTGAG TTTTCAATAT TTCTGAGAAC CTTATCTCCA 
    ACGTTTATGA AGATCATATC CATTGCTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18464303 [Map]; Strand: w
      • AT1G49880.1 - [+] show detail - Erv1/Alr family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6113 - 5-prime edge 
    CTCCGCCAAT CGCAACAAAC AGTTCCAGTC TTCAGAAACT TCCTCTCAGG 
    TACAAACCCC ATCCCGATTC AATTAGTTTT CCGGGTTTGT TTTGTCACTT 
    AGTAAGACCT TCCCTTGCTT ATCATCATCA CCAACGTGTT CGATGAAATT 
    CCCCAATGAA CTCTTTCTAC CTTTCCTGGG TCAGAAATCG TCTTTCTTTG 
    TTATTTTACC AAACCTGTGG TTGAAAGTTA GATGCTTTAT TCAATTCGGT 
    TCTCTATTGT CAGGAAATTT CTACTGGTAT ATACTTTTTT TATATGATGA 
    TTTGGAGTTT GTGTAACTAC ATATGGTACT GTCAACTGGA

AT1G35535.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.6e-252 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G49880.1

Model type
Protein coding
Short Description
Erv1/Alr family protein
Computational Description
Erv1/Alr family protein; FUNCTIONS IN: thiol oxidase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Erv1/Alr (InterPro:IPR006863); Has 843 Blast hits to 843 proteins in 218 species: Archae - 0; Bacteria - 1; Metazoa - 134; Fungi - 258; Plants - 61; Viruses - 64; Other Eukaryotes - 325 (source: NCBI BLink).
Link
InterPro Scan - TAIR