ET6122

CSHL Arabidopsis genetrap mutant lines

Original: ET6122

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6122

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17581377 [Map]; Strand: w
      • AT4G37390.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET6122 - 3-prime edge
    TACTTTCTCC CTGGGTATAG TCTTCGTTTC TGCGTAGCTT GTGTACTCGA 
    TCACACGTGT TCCTTGCTCT GCAAACAACC TCGACGCATT CTCCACTGCT
    TTTTGTAGCT CAGCCTCGTC GGTTTTATCA GATTCTATGC TTAGCAAAAC
    ATTCTTTCTC CGTATGAATT TGAACTGTGG AGCGGAATTA TGGAACCCCG
    TGACACGAAG AATGTCGCCA ACTCTGTACC GGCAGAGCCC CGCGTAGGTC
    GTGATCACGA GTTCGTACTC TTTTCCTACC TCAACATTAG CAAGCTCCAC
    AAGTGACGTT TCGTCTAATG ATGCTTCTGC TGCTCCATCT CCATCGTGAT
    TATGTGGGAG GAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 250059 [Map]; Strand: c
      • AT4G00580.1 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: ET6122 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATGAGG AGGCTAAATC 
    TGAGAAGCCT AAAAAGAAAA AAAGAGCAAA GAAAGTCAAG ACTCCGACTA
    AAGAAGATGG TCTAGTTGCT TCTAGCTCAA GGAACGCTGA GGAAGATGGT
    GTCTCGAGAG ATCCGTAGGA GAATGAGGAT AAAGTTGTGA AGAAGCCGAG
    CAAGAGATCC AAGGAGGAGC AGTCTTTCAA CGTTGTGGAG GAGGATGCTT
    AAGTATTGTC TCCTATCACT TAACAGGATC ATTCATCGCT TCTCTTTATC
    TCTTCTCTTT TGAACTTTTG GTTTTTGTCT TGAATTTCTT TTGGTTTTTG
    TCTTTTGAAC ATTTGATGCT TTATGTTTTT TCCGGTTAAA GCAATTTATT
    TCCTTTTTTA TCATATCTGT TATTAGCTTT AGAGAGAGTG TGTGTGTCTC
    TACTTGGACT GCGTATTCCA TGTACTTCAC TGCAGGGAAG TTAGACCGTG
    CTAACTTCTG AAGCAGCTCC ACTATTTTGT CTCTGCTCTT TATCCTAGAA
    A
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21507240 [Map]; Strand: c
      • AT3G58070.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6122 - 5-prime edge
    TCATCCTACT TTCTCCCTGC CTAGGTGGAC CCAAAACGCT CACAAACGCG 
    AACGTCAGCT TGCCAAACGC GGTGTTTCCT CTTACTTTTA TCATCCTGAC
    AATAACCCTT ACAGTTACCG TCATTACCCG TCGTGGACCA ATGGTCCGTT
    AACCGCGGCT AGGTCCTATG GAGGATTTTC TTCTGGTCCT AAGCCGTCGG
    GGTATTATAC ACGACCCAGC TATGGGAGTC AGTTAGGACT ATGGCGTCTA
    CCGCCTCGCG TTCAAGGCGT TTATAACTCA AACGCAGCGT TTACTAGTAA
    TGGCTCTTCT TCTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18191283 [Map]; Strand: c
      • AT3G49060.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G49060.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6122 - 5-prime edge
    TTGTATAAAA ACTGTAACAT ATGTTGGTTT GCTTGGCCAA TCTGTCTTAG 
    AGCTTGGAAA TTTTAATTTG TTTGTGGAAG CAGGACATTG TGATGACTTT
    AGCTGCTATG TATANGGGAA AAAAAATTAT TGTCCATTGC CAAGGATGTT
    AAGACTTGTT TACCTGCAGC GCACAAGAAA CTTGTTGGTG GTAGCTTTAA
    AAAGCATGAT GTCAAGGTGA TTGAGCGAGT TGAGAAACCC AAAGTGGATG
    AACTGATGAA TTCTTATCTC CAACTTTTAT CTGAAACTGA GGTATCAATT
    CTCTCTTTTT TCGTGTAAGG TTGTTATTGA TTGTAATCTC ACACAAACTA
    TCAGTTAGCT GTTTTGGTGT TCAAGTTTAA TTGAAGTAAG GCAACTCATT
    TTGAATATAC CTGTGATCTT GGTGGATATA ATTTTTGTTC ATATAATGAC
    ATAACCTACA TGGAAAAACC TTGTGCCGTG TGCACTCGTC ATAAATGTAG
    AGCTTAGAAA TCTTTAAATT ATTAGGCATT CTTATTCAGG AATCGTTCAT
    ATGATAACCG GATTGACCTA GTTCTTTTTA GATTCAAACA GATAAACTTT
    GCATTGCGGG GCAAAATATC GAGGAATGTA TCGTAGAACT AATTGCTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18191288 [Map]; Strand: c
      • AT3G49060.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G49060.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6122 - 5-prime edge
    GTACATTGTA TAAAACACTG TAACATATGT TGGTTTGCTT GGCCAATCTG 
    TCTTAGAGCT TGGAAATTTT AATTTGTTTG TGGAAGCAGG ACATTGTGAT
    GACTTTAGCT GCTATGTATA GGGAAAAAAA ATTATTGTCC ATTGCCAAGG
    ATGTTAAGAC TTGTTTACCT GCAGCGCACA AGAAACTTGT TGGTGGTAGC
    TTTAAAAAGC ATGATGTCAA GGTGATTGAG CGAGTTGAGA AACCCAAAGT
    GGATGAACTG ATGAATTCTT ATCTCCAACT TTTATCTGAA ACTGAGGTAT
    CAATTCTCTC TTTTTTCGTG TAAGGTTGTT ATTGATTGTA ATCTCACACA
    AACTATCAGT TAGCTGTTTT GGTGTTCAAG TTTAATTGAA GTAAGGCAAC
    TCATTTTGAA TATACCTGTG ATCTTGGTGG ATATAATTTT TGTTCATATA
    ATGACATAAC CTACATGGAA AAACCTTTGT GCCGTGTGCA CTCGTCATAA
    ATGTAGAGCT TAGAAATCTT TAAATTATTA GGCATTCTTA TTCAGGAATC
    GTTCATATGA TAACCGGATT GACCTAGTTC TTTTTAGATT CAAACAGATA
    AACTTTGCAT TGCGGGGCAA AATATCGAGG AATGTATCGT AGAACTAATT
    GCT

AT3G49060.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 84033 Blast hits to 83330 proteins in 4034 species: Archae - 70; Bacteria - 7751; Metazoa - 31165; Fungi - 5115; Plants - 29189; Viruses - 207; Other Eukaryotes - 10536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49060.2

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1).
Link
InterPro Scan - TAIR

AT3G58070.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile
Computational Description
GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00580.1

Model type
Protein coding
Short Description
COP1-interacting protein-related
Computational Description
COP1-interacting protein-related; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT2G01800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37390.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.
Computational Description
BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1); Has 1707 Blast hits to 1543 proteins in 239 species: Archae - 1; Bacteria - 597; Metazoa - 55; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
Link
InterPro Scan - TAIR