ET6122

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6122

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 17581377 [Map]; Strand: w
- AT4G37390.1 - [+] show detail - Auxin-responsive GH3 family protein
  Distance: 0; Region: exon3 (CDS)

TACTTTCTCC CTGGGTATAG TCTTCGTTTC TGCGTAGCTT GTGTACTCGA 
TCACACGTGT TCCTTGCTCT GCAAACAACC TCGACGCATT CTCCACTGCT 
TTTTGTAGCT CAGCCTCGTC GGTTTTATCA GATTCTATGC TTAGCAAAAC 
ATTCTTTCTC CGTATGAATT TGAACTGTGG AGCGGAATTA TGGAACCCCG 
TGACACGAAG AATGTCGCCA ACTCTGTACC GGCAGAGCCC CGCGTAGGTC 
GTGATCACGA GTTCGTACTC TTTTCCTACC TCAACATTAG CAAGCTCCAC 
AAGTGACGTT TCGTCTAATG ATGCTTCTGC TGCTCCATCT CCATCGTGAT 
TATGTGGGAG GAA

3 prime edge [+] show sequence

Chromosome: 4; Position: 250059 [Map]; Strand: c
- AT4G00580.1 - [+] show detail - COP1-interacting protein-related
  Distance: 0; Region: exon7 (CDS)

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATGAGG AGGCTAAATC 
TGAGAAGCCT AAAAAGAAAA AAAGAGCAAA GAAAGTCAAG ACTCCGACTA 
AAGAAGATGG TCTAGTTGCT TCTAGCTCAA GGAACGCTGA GGAAGATGGT 
GTCTCGAGAG ATCCGTAGGA GAATGAGGAT AAAGTTGTGA AGAAGCCGAG 
CAAGAGATCC AAGGAGGAGC AGTCTTTCAA CGTTGTGGAG GAGGATGCTT 
AAGTATTGTC TCCTATCACT TAACAGGATC ATTCATCGCT TCTCTTTATC 
TCTTCTCTTT TGAACTTTTG GTTTTTGTCT TGAATTTCTT TTGGTTTTTG 
TCTTTTGAAC ATTTGATGCT TTATGTTTTT TCCGGTTAAA GCAATTTATT 
TCCTTTTTTA TCATATCTGT TATTAGCTTT AGAGAGAGTG TGTGTGTCTC 
TACTTGGACT GCGTATTCCA TGTACTTCAC TGCAGGGAAG TTAGACCGTG 
CTAACTTCTG AAGCAGCTCC ACTATTTTGT CTCTGCTCTT TATCCTAGAA 
A

5 prime edge [+] show sequence

Chromosome: 3; Position: 21507240 [Map]; Strand: c
- AT3G58070.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: 0; Region: exon1 (CDS)

TCATCCTACT TTCTCCCTGC CTAGGTGGAC CCAAAACGCT CACAAACGCG 
AACGTCAGCT TGCCAAACGC GGTGTTTCCT CTTACTTTTA TCATCCTGAC 
AATAACCCTT ACAGTTACCG TCATTACCCG TCGTGGACCA ATGGTCCGTT 
AACCGCGGCT AGGTCCTATG GAGGATTTTC TTCTGGTCCT AAGCCGTCGG 
GGTATTATAC ACGACCCAGC TATGGGAGTC AGTTAGGACT ATGGCGTCTA 
CCGCCTCGCG TTCAAGGCGT TTATAACTCA AACGCAGCGT TTACTAGTAA 
TGGCTCTTCT TCTT

5 prime edge [+] show sequence

Chromosome: 3; Position: 18191283 [Map]; Strand: c
- AT3G49060.2 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: intron1 (CDS)
- AT3G49060.1 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: intron1 (CDS)

TTGTATAAAA ACTGTAACAT ATGTTGGTTT GCTTGGCCAA TCTGTCTTAG 
AGCTTGGAAA TTTTAATTTG TTTGTGGAAG CAGGACATTG TGATGACTTT 
AGCTGCTATG TATANGGGAA AAAAAATTAT TGTCCATTGC CAAGGATGTT 
AAGACTTGTT TACCTGCAGC GCACAAGAAA CTTGTTGGTG GTAGCTTTAA 
AAAGCATGAT GTCAAGGTGA TTGAGCGAGT TGAGAAACCC AAAGTGGATG 
AACTGATGAA TTCTTATCTC CAACTTTTAT CTGAAACTGA GGTATCAATT 
CTCTCTTTTT TCGTGTAAGG TTGTTATTGA TTGTAATCTC ACACAAACTA 
TCAGTTAGCT GTTTTGGTGT TCAAGTTTAA TTGAAGTAAG GCAACTCATT 
TTGAATATAC CTGTGATCTT GGTGGATATA ATTTTTGTTC ATATAATGAC 
ATAACCTACA TGGAAAAACC TTGTGCCGTG TGCACTCGTC ATAAATGTAG 
AGCTTAGAAA TCTTTAAATT ATTAGGCATT CTTATTCAGG AATCGTTCAT 
ATGATAACCG GATTGACCTA GTTCTTTTTA GATTCAAACA GATAAACTTT 
GCATTGCGGG GCAAAATATC GAGGAATGTA TCGTAGAACT AATTGCTC

5 prime edge [+] show sequence

Chromosome: 3; Position: 18191288 [Map]; Strand: c
- AT3G49060.2 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: intron1 (CDS)
- AT3G49060.1 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: intron1 (CDS)

GTACATTGTA TAAAACACTG TAACATATGT TGGTTTGCTT GGCCAATCTG 
TCTTAGAGCT TGGAAATTTT AATTTGTTTG TGGAAGCAGG ACATTGTGAT 
GACTTTAGCT GCTATGTATA GGGAAAAAAA ATTATTGTCC ATTGCCAAGG 
ATGTTAAGAC TTGTTTACCT GCAGCGCACA AGAAACTTGT TGGTGGTAGC 
TTTAAAAAGC ATGATGTCAA GGTGATTGAG CGAGTTGAGA AACCCAAAGT 
GGATGAACTG ATGAATTCTT ATCTCCAACT TTTATCTGAA ACTGAGGTAT 
CAATTCTCTC TTTTTTCGTG TAAGGTTGTT ATTGATTGTA ATCTCACACA 
AACTATCAGT TAGCTGTTTT GGTGTTCAAG TTTAATTGAA GTAAGGCAAC 
TCATTTTGAA TATACCTGTG ATCTTGGTGG ATATAATTTT TGTTCATATA 
ATGACATAAC CTACATGGAA AAACCTTTGT GCCGTGTGCA CTCGTCATAA 
ATGTAGAGCT TAGAAATCTT TAAATTATTA GGCATTCTTA TTCAGGAATC 
GTTCATATGA TAACCGGATT GACCTAGTTC TTTTTAGATT CAAACAGATA 
AACTTTGCAT TGCGGGGCAA AATATCGAGG AATGTATCGT AGAACTAATT 
GCT

AT3G49060.1

Model type: Protein coding
Short Description: U-box domain-containing protein kinase family protein
Computational Description: U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 84033 Blast hits to 83330 proteins in 4034 species: Archae - 70; Bacteria - 7751; Metazoa - 31165; Fungi - 5115; Plants - 29189; Viruses - 207; Other Eukaryotes - 10536 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G49060.2

Model type: Protein coding
Short Description: U-box domain-containing protein kinase family protein
Computational Description: U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1).
Link: InterPro Scan - TAIR

AT3G58070.1

Model type: Protein coding
Short Description: C2H2 and C2HC zinc fingers superfamily protein
Curator Summary: Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile
Computational Description: GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00580.1

Model type: Protein coding
Short Description: COP1-interacting protein-related
Computational Description: COP1-interacting protein-related; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT2G01800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G37390.1

Model type: Protein coding
Short Description: Auxin-responsive GH3 family protein
Curator Summary: Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.
Computational Description: BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1); Has 1707 Blast hits to 1543 proteins in 239 species: Archae - 1; Bacteria - 597; Metazoa - 55; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
Link: InterPro Scan - TAIR