ET6125

CSHL Arabidopsis genetrap mutant lines

Original: ET6125

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6125

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25668033 [Map]; Strand: w
      • AT1G68450.1 - [+] show detail - VQ motif-containing protein
        Distance: -5794; Region: intergenic
      • AT1G68460.1 - [+] show detail - isopentenyltransferase 1
        Distance: 577; Region: intergenic
    Flanking Genome Sequence: ET6125 - 3-prime edge 
    TTTCTCCCTG CTTATAACTC TACTACAAAG TTGCCTAGAC GTCTTGATGG 
    TCTAACTGAC TACGTACGAT GCTTAACCGG TGGTTTAGGA GGCAACTTAA 
    ATTCCTAAGC CGTCTAAAAA CGAGTCTTTG ATGCTTGATC GTTAATGTAT 
    GAAATTTGAT GTTTTCAAGT TTTTCTGTTT TGTGTTATGT TTACATGATT 
    ATCCTATTAT CCTATGCACG TTTAGTTTAT CATTTAAAAA CAGGAATTGA 
    TTTCAAAATG AAAAAGACAA AACACCAATG ATTTCCTCAT TTATACATTT 
    AATTTTGAGT AAATAAAATA GATAAACCAT AATCTTCTAA ATGTATTTAG 
    AAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19559024 [Map]; Strand: w
      • AT2G47730.1 - [+] show detail - glutathione S-transferase phi 8
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: ET6125 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TTTCGAGCTC 
    TTGGACAGCG GCAGGGTCAG TGGTCATGCC GAACATGCCT TTAAAGACAC 
    GCTCGAAGGC AAGCTTAGAG GCGTTAGGGT CAAACTGTTG ACCTTCAACT 
    TGAAGCCATA CGTTAGTGGT TGCCTTGACT TTCTTGCAGT CTTGGGAGAT 
    AAGCTTTTCA CCTTTCTCAC TGTATTCCTC TGCTAGGTAC TGTGTGATGG 
    CTCTTGACTC TGCAAATATA TTACCAACAA AAACTTTCAG CAACAAAAAT 
    AATCATCACA GTCTGTCATT TCAGATAAAT CGTTATCCAA TACAAAGTGA 
    CTAAGGCGTA ATGATGTTTC TGTAAATCTA AAAAAGTCAA ATCATTGATC 
    AAAGCAAAAA TAAACTGACC GAAAAGCGTC AAATCACCGT CCTCGAGAGC 
    AGGAATTTGA CCGAAGGGCT GAAACAAAAC AAAGATCATT GTCAGATAAT 
    TGGAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 106339 [Map]; Strand: w
      • AT2G01175.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -123; Region: promoter
    Flanking Genome Sequence: ET6125 - 5-prime edge 
    TTAACTTTAT TTTTTTTATT AAAATTTTGC TTTTTGTAAG TTAAGAAACT 
    AATAAGAGTC TTTAACAAAT TTCTACTCCA ATGGTTAAGA AACAATGGGT 
    CCTTGAGTAA ACCAAAATCA AATGTTTGCA AAATAATGTC TTCCAATACA 
    AGCATGAAAT TCATAATAAC AAAGAGAAGA GATGAAATTT GAATTGCTAG 
    TATCATCATT TGCTCAAGAA AACACAATAT AACAATACGC TAGCATGACA 
    AAAACACAGT TTTCAGTTCT GTTCCAATAT TTTCAGAAAC AGAGAACCAT 
    TTTAATATCT TGAGTGCACA AAAGAAACGG TTTCCAGTTG TGCTTCAATA 
    TTTTCAGAAC TGATTTAATA CCTGCAGCAT AGTTGGCAGC GCATGTGCGT 
    AAGCACAAGT GTCAAACTTT GTTCTACACT AAAATAATAG CTACCCAGAA 
    ATTAAAAGAA GAAGAAGAAT GAGAGAAACG AAGGGAGAAA TAGAGAGAAA 
    GAGAGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16709721 [Map]; Strand: w
      • AT1G44000.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -8; Region: promoter
    Flanking Genome Sequence: ET6125 - 5-prime edge 
    CGTAGCCACA AATTCAGTCT TGGTGACGAG CTTCTTTCTC CACACAAATT 
    CGATTTTGCA AATTGATTTT GGATTTTGTG ATATTATTTA TTTATATCGA 
    AATATTGTGA TTGGTGGATG GAGTTGAGAG TTGTTCCACG TCAGCAAGTC 
    CTTTTGTTTT TTTTCATATC TCTCGACAAT GAGCTATGGT GGCTTCGATA 
    TTACAGTCCA GGTTAATATA AAATGAATTG TATGATTTTA TTATACCAGT 
    TGGTAAAGGT ACCAAATAC

AT1G44000.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68450.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G18360.1); Has 133 Blast hits to 133 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68460.1

Model type
Protein coding
Short Description
isopentenyltransferase 1
Curator Summary
Encodes a putative adenylate isopentenyltransferase. It catalyzes the formation of isopentenyladenosine 5'-monophosphate (iPMP) from AMP and dimethylallylpyrophosphate (DMAPP), but it has a lower Km for ADP and likely works using ADP or ATP in plants. It is involved in cytokinin biosynthesis.
Computational Description
isopentenyltransferase 1 (IPT1); FUNCTIONS IN: AMP dimethylallyltransferase activity, ATP/ADP dimethylallyltransferase activity; INVOLVED IN: cytokinin biosynthetic process, secondary growth; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATP/ADP isopentenyltransferases (TAIR:AT3G19160.1); Has 7944 Blast hits to 7761 proteins in 2606 species: Archae - 0; Bacteria - 5388; Metazoa - 167; Fungi - 152; Plants - 293; Viruses - 0; Other Eukaryotes - 1944 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01175.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47730.1

Model type
Protein coding
Short Description
glutathione S-transferase phi 8
Curator Summary
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase phi 8 (GSTF8); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: in 8 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase PHI 2 (TAIR:AT4G02520.1); Has 15602 Blast hits to 15586 proteins in 1475 species: Archae - 0; Bacteria - 9018; Metazoa - 1960; Fungi - 883; Plants - 1109; Viruses - 0; Other Eukaryotes - 2632 (source: NCBI BLink).
Link
InterPro Scan - TAIR