ET6126

CSHL Arabidopsis genetrap mutant lines

Original: ET6126

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6126

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19482601 [Map]; Strand: w
      • AT5G48070.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 20
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET6126 - 3-prime edge
    ACCGTTACCG ACCGTTTTCA TCCCTAGCCA CAACCTCAAC CACCACAGGT 
    TCCGGTGTCG TCTTCAGGAT CTCTACAGGC TCTTTCCATA ACGGACCTCC
    CAAGAATATC GCCGTCGGTG TACGACCTCT CCTTCATCTC ACTCGAAGAA
    ATGAAATCTA GTANATAGCT AAAGATGACA AGAATGGTTT GATCGAGATA
    TGTATATTAC TTACATAGAA TGTTGTCACT GTTCCAGCAG AGTTACCAGG
    TACAAGTTTC ATTTGAACCT CTACTTTGCC ATAAAGAAAC TCTTGATGGG
    ACTGAAAACC GGAACCAGAG AATTTGTCGA GCGAGAGAGA AAGAAGATTT
    CCGACATTGT CGAGAATTTT TCCACGGCCA TCACCCCAAT GTATCTGAAC
    GTCCTTGTGA AAGCTACCAG CGTAGACACG CTCATATTGT GCTGCAAAGA
    GAAAGATAAT CAAGAAGGCG AACCTTCTAC CGCAAAATGA CACCATTTAA
    AATTGCTTTT GGAAAGAGTA GTTATAGTAT CTTAGATGGA TTGGTGATGT
    GAAAATGAAG GTAAAGGA

AT5G48070.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 20
Curator Summary
putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.
Computational Description
xyloglucan endotransglucosylase/hydrolase 20 (XTH20); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 18 (TAIR:AT4G30280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR