ET6128

CSHL Arabidopsis genetrap mutant lines

Original: ET6128

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6128

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11380838 [Map]; Strand: w
      • AT2G26710.1 - [+] show detail - Cytochrome P450 superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6128 - 3-prime edge 
    CCAACAAGCT TCTTTAACAT TTCCGATGAA GAAATGATAA GGAGGACCTC 
    GAATTCCTTG TTTAGAGAAA TGTTCTTCAA TCTTTCTTGG TCTCCACCCT 
    AACAGAGACC TACCCTTCAC TCTTACAAGA CTTAAGATTA CAGACAGAAC 
    AAGAACCTTT GGAATGAACC AGCTGCTACT TTCTTCCTCC ATTGTCGGAA 
    CACCAACAAA GAAAAGAGAG AAAACACAAA AAGGAGAGCC TAAAGTTTTC 
    TTCTTTGGTC TCTTTTGAGT GCCGGAGAAA GAGGGAATGA GGTGTCAAAA 
    AGGAGGATTT ATTTCTTCTT TTTTTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1582133 [Map]; Strand: w
      • AT3G05470.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6128 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTCAA CGGACCCATC 
    CATTGGAACA ACCCGAGATT CAACGGCGAA AACATGAGAA AGGAGGAACA 
    TTTAAGAAGA TTCTTGTACC TGTCGTTGCT TCCACAGCTT CTGCAATCGG 
    TTTCGTAGTA TGTGTCGTTG GAGTGTTCTG TCTCTGCGCG AGAAGAAAAA 
    GGAAAATGAA CGGTAAAACG CTGTCGTTTA AAAGGAAAAA GGGAAAATCT 
    CAAAGCTCGA CGAGGAAGGT TAGTGTAAAC CCTACTCTCG ATTTCTTGTA 
    CCTAAACTCA CTAGGAGTTG ACTTGGAGAG ACAAAACTCT GTTTCTGTTA 
    AAGAAATACG AGAAACAGAG AAGGATTTGA ACGGTATCAA TGGTGGATTG 
    CTTGAAGAAG AGGTAAAGAG AAGTATAGAA ACAGAGATCT CACATGATTG 
    GGACAATGCT AGTAGTTATT CGACCAAAGA GATTGTGTCG GTGCACGAAA 
    ATGATGAAGA ACAAACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11381053 [Map]; Strand: w
      • AT2G26710.1 - [+] show detail - Cytochrome P450 superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6128 - 5-prime edge 
    TACGGTTAGT TCTTTTTCTC AAATTTCCTC TGTTTTTTTA TTTTTCAAGA 
    TTCAGACTCT TCTTATGGTT TTACTCTGTT TCATATACTT CAACTATTTG 
    TTATTGGAAA ACCTCTTTTG TAAAAGTTGA AACAGAAAAC TTTTTGTATA 
    TATAAAGAAC ACAAACTCTT GTGTCTTTTT TTTTTTTGGG ATTTTTAAAA 
    AATTTGGGGG AAAAATGGTT TAAAAAAAAA GGACCTTGGG GTTGGGAAGG 
    GAAAAAGGTT TTTTTGGGGG GGGAAAAAAA ACCTTGGGAA TTGGGCCCAT 
    TTTTTTGAAA AAAGAAAAAA AGGGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3694293 [Map]; Strand: c
      • AT3G11690.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -695; Region: promoter
    Flanking Genome Sequence: ET6128 - 5-prime edge 
    TTCATCCTAC TTTCTCCCTG CGTACACTAT CAGTTGAAGA ATTTAAAGAA 
    GTATATACCG ATATGTATAT ATTATCTTTA AAGGTTTTAG AATTTTCTTG 
    ATTTTGGTGA CTGGTTCACG CCCTCGAGGG ACATAGTTAA AAGGTCAATG 
    CAAGTACTCA TCTTCAAAAT ATTCGTATCT GGACCAAGAA AAGGTAATGA 
    TGCATTGTAT TTAAAAAAAA AAAAAA

AT2G26710.1

Model type
Protein coding
Short Description
Cytochrome P450 superfamily protein
Curator Summary
Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.
Computational Description
PHYB ACTIVATION TAGGED SUPPRESSOR 1 (BAS1); FUNCTIONS IN: steroid hydroxylase activity, oxygen binding; INVOLVED IN: response to light stimulus, response to brassinosteroid stimulus, brassinosteroid homeostasis, brassinosteroid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 72, subfamily A, polypeptide 8 (TAIR:AT3G14620.1); Has 34717 Blast hits to 34565 proteins in 1738 species: Archae - 71; Bacteria - 6148; Metazoa - 11470; Fungi - 6879; Plants - 8435; Viruses - 3; Other Eukaryotes - 1711 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05470.1

Model type
Protein coding
Short Description
Actin-binding FH2 (formin homology 2) family protein
Computational Description
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homolog 6 (TAIR:AT5G67470.1); Has 5495 Blast hits to 4819 proteins in 357 species: Archae - 2; Bacteria - 168; Metazoa - 2550; Fungi - 658; Plants - 1088; Viruses - 235; Other Eukaryotes - 794 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11690.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR