ET6143

CSHL Arabidopsis genetrap mutant lines

Original: ET6143

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6143

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26529038 [Map]; Strand: w
      • AT5G66430.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -2239; Region: intergenic
      • AT5G66440.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1197; Region: intergenic
    Flanking Genome Sequence: ET6143 - 3-prime edge 
    TTGGCACCAA TCATAGTGTA ATAATTTTGA ATGGCCAAAA GTACATAAAA 
    ATTAACTTTA ATGCAGACAG ACACCCACGC AGAAAAATTA AGAAGAAAAG 
    TGACTTTATT TTTTCACTAA GTCCCGTAAT CTCTGCTCTA CCAAAATAAA 
    AGTCGGTTCT TTTCTACCCT TCTTTTGACA TTTATGGATT CTCTGATATT 
    TTTGAGCCGA TCCATCTTTT GAATGATATT AGTGGAGTAT TTTTAAAGAA 
    TTGTGTTGGA ATTCTTATGG CGGACTCTTT GATTAGGAGC AATCATGATA 
    GTTTCCACCC CGACCGGCTA TTGCTGTAAT TGGTGTTGTT GGATTTGTCA 
    TTAAACCCTT ATTTCTAACA CAAGTACACA ACACAACACA ACACAGCGTA 
    ACATTTTGAG ATATTGAATA AAACAAATAC AACGCATAAA AGAAATTTAA 
    AGCGATTAGC ATTCTTAAAT TCATTCACCA AAGCCTAGCA AATATTACAT 
    TGGTACGTTG AAAATATCAT TCTTAAATTC ATTGATTATT TTTTTAATGT 
    TATTTTTAGA TATATTCCTA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9449962 [Map]; Strand: w
      • AT1G27200.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6143 - 5-prime edge 
    TACTTTCTCC CTGCTTCACA GAACCGTCGT TTCCATCCGG CGGCTCGATT 
    GCCTCTGTCC CGAGCCCTGG AGCTCGATCT TTAGACCCTT GATTCTGATT 
    CTCTTGCCAG TCAACAACAT AAGTAGCCAC TCTTCTGTAA AACTTAGCTT 
    TGAAAGTGTC CCAAACTTGG TACTTGTAAT GGTTCACTAC CGCAACACTC 
    TCCACCAAAC TCATATGCCC CACTCCTTCT TTCAACTGAA AATGATGTAC 
    TTCATTGAGC AATGAGCTTG TGAGCAACTC AGGGCGGATT ATCGACTTGT 
    GTCTCTCGGG GTTCGCTTGT CTACAAGTGT AACCTACGGT CACGCCTTGT 
    GATGGAACCG AGGTCAGACC GGATGGACCG TAGCTATGAC AGTCCGTTCT 
    GATCTCTCCA ACCAAATCCC AAGAAGTGTA GTTCGATACA AGCGACTTCA 
    AAGCGTTTTT GCTCGGTAAG CCTTGAGAGC GATGCGTAGG GAAGTAGTAG 
    AACTCGTCGA CATCGAAGAA TCCAACCCAA TTGCATTCTT CTTTCGCTCT 
    AACCGCACAA TGCGAAAAAC CGGCTTCTTG AGTCTTGATC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22850532 [Map]; Strand: c
      • AT3G61730.1 - [+] show detail - reduced male fertility
        Distance: -57; Region: promoter
    Flanking Genome Sequence: ET6143 - 5-prime edge 
    TTCATCCTAC TTTCTCCCTG ATCCAGCTAC ACGGTTCAGA GCAAAAACCA 
    AATTCTGAAA CAATTTTCCG CTTAACAAAT TAGCGACTAG TGAGATACTG 
    AGTGAGAAGA TAGATAGAGA GAGAGAGAAT GAAGACGAGA TCTAGTGATG 
    CCGAAGGAGA TAGTAGAGGG AAGATGATAG CTCCGGTGGG AGAAGGAAAT 
    GGTGGACGGA AGAGAAAATT GGTGCAGAGC AACGAACAGA AGAACGATAT 
    TCAGAGAGAA GAAGATGGTA GAGCTAAGAG AAGAATCGTT CAGAGCAGCG 
    ACCAGAAGAA CGGGAAGATC CTCAGAGGAA TTCGTGGCTG TGTATCTCCA 
    CGGTGCTCTG CTCAGACTTA CCAGTCTCGC TTTTCATGGT ATTTTCTTCT 
    CCCCTATGAA CGAAATAGAT CTATTCTCAG ATATTATTTG TGTGTGTGAG 
    TTTGGGTTGA GCTCGAATTT GATTTTGAAA TGTTTGTACG GCGTTTAATC 
    TTACTGTATT GGATGGATCT AGGAGATAGA GTTCGATCAA TCATCTTCGG 
    TACCTTCTGG AATCAATTTG ATTTGTATGA GATTCAGATG CTTATATCGA 
    TCTCTGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22850482 [Map]; Strand: c
      • AT3G61730.1 - [+] show detail - reduced male fertility
        Distance: -7; Region: promoter
    Flanking Genome Sequence: ET6143 - 5-prime edge 
    AATTCTGAAA CAATTTTCCG CTTAACAAAT TAGCGACTAG TGAGATACTG 
    AGTGAGAAGA TACATACAGA GAGAGAGAAT GAAGACGAGA TCTAGTGATG 
    CCGAAGGAGA TAGTAGAGGG AAGATGATAG CTCCGGTGGG AGAAGGAAAT 
    GGTGGACGGA ACAGAAAATT GGTGCAGAGC AACGAACAGA AGAACGATAT 
    TCACAGAGAA GAACATGGTA GAGCTAAGAG AAGAATCGTT CACAGCAGCG 
    ACCAGAAGAA CGGGAAG

AT1G27200.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 321 Blast hits to 319 proteins in 87 species: Archae - 0; Bacteria - 165; Metazoa - 2; Fungi - 4; Plants - 113; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61730.1

Model type
Protein coding
Short Description
reduced male fertility
Curator Summary
Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain.
Computational Description
REDUCED MALE FERTILITY (RMF); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36000.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66430.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G04370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66440.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR