ET6172

CSHL Arabidopsis genetrap mutant lines

Original: ET6172

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6172

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 72991 [Map]; Strand: w
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -3107; Region: intergenic
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 267; Region: intergenic
    Flanking Genome Sequence: ET6172 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTATTT TCTAGTGTTA 
    CGTTCTCTCC AAACGTTGTA TTTTACAGTT CTCATATATT AAATTTCTCA
    AATATAAATA AACTATTTTG GATCAACAAA ATAAAAATTT AATATTTTCT
    AAGAAACAAT GTTGCTTTCA TATAAAACAC TCTTTCTACT ATAAGAAAAT
    ACTTAGTATA TCAGTGTAAT AAGGAACTTT TTGAATTGAC AACTTATATT
    TTATTTTGGG AATGTGACAC GTTTACACAC TTTTACAAAA TCTTATTCTT
    TTTGAGGCAC TTTTCAGGGA TGAGGCACTT TTCTTTGTTT TTGGAGGTAA
    AAAGGACAAT TATATCCTTT CCAAATAACT GTCTAATCAC GTAATATTTT
    CTTTAAAAAG AAATGGAATT TGCTTTTTTT TTAATCTTAT ATCTGATGAA
    AAAGGTCTTC ATCTCTCTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 73095 [Map]; Strand: w
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -3211; Region: intergenic
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 163; Region: intergenic
    Flanking Genome Sequence: ET6172 - 5-prime edge
    CCCGTGCACT CACCTCATTA CCGTCATCGA CAAGACCATT CGAGATCGCA 
    TCACCAGTCT TTATTATCAA GGCACCAGCA AATATGCAAA CCTTCAGAAC
    GGTGCAGGCT TCACTAACGT GATAATTTGT AATGTTCTGT TTTGAGATCA
    TCTCCAGGCC TAGCTAACTT TATGCTAGGT TATTCAGCTG TGTATGTTTA
    AATGCGGCAT GCGTTACTGT TTTGATAAAG TAGCTTTAGA AGAATGTAGT
    GTGTTGGGAA TAAGAGTAAT TTTGTTTTGT GTTTACCAAA TTACAGCACA
    ACACAGACAT ATTCATTCTT CATGCTCGTG ATAGTGCCTA GAGAATTAAC
    GACTTGTGAT CACATTATTA GAGGAAACTC CTAACTAATA AGGATTAGGA
    TAAACAACAC TACATGTGGT ACACTCAACA ACTCAAAGAT TATCTCCTGA
    AACCTTATCC AACTGTTCTT CGGCCCCAAG CAGTGAT

AT2G01050.1

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR