ET6172

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6172

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 72991 [Map]; Strand: w
- AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
  Distance: -3107; Region: intergenic
- AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
  Distance: 267; Region: intergenic

TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTATTT TCTAGTGTTA 
CGTTCTCTCC AAACGTTGTA TTTTACAGTT CTCATATATT AAATTTCTCA 
AATATAAATA AACTATTTTG GATCAACAAA ATAAAAATTT AATATTTTCT 
AAGAAACAAT GTTGCTTTCA TATAAAACAC TCTTTCTACT ATAAGAAAAT 
ACTTAGTATA TCAGTGTAAT AAGGAACTTT TTGAATTGAC AACTTATATT 
TTATTTTGGG AATGTGACAC GTTTACACAC TTTTACAAAA TCTTATTCTT 
TTTGAGGCAC TTTTCAGGGA TGAGGCACTT TTCTTTGTTT TTGGAGGTAA 
AAAGGACAAT TATATCCTTT CCAAATAACT GTCTAATCAC GTAATATTTT 
CTTTAAAAAG AAATGGAATT TGCTTTTTTT TTAATCTTAT ATCTGATGAA 
AAAGGTCTTC ATCTCTCTC

5 prime edge [+] show sequence

Chromosome: 2; Position: 73095 [Map]; Strand: w
- AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
  Distance: -3211; Region: intergenic
- AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
  Distance: 163; Region: intergenic

CCCGTGCACT CACCTCATTA CCGTCATCGA CAAGACCATT CGAGATCGCA 
TCACCAGTCT TTATTATCAA GGCACCAGCA AATATGCAAA CCTTCAGAAC 
GGTGCAGGCT TCACTAACGT GATAATTTGT AATGTTCTGT TTTGAGATCA 
TCTCCAGGCC TAGCTAACTT TATGCTAGGT TATTCAGCTG TGTATGTTTA 
AATGCGGCAT GCGTTACTGT TTTGATAAAG TAGCTTTAGA AGAATGTAGT 
GTGTTGGGAA TAAGAGTAAT TTTGTTTTGT GTTTACCAAA TTACAGCACA 
ACACAGACAT ATTCATTCTT CATGCTCGTG ATAGTGCCTA GAGAATTAAC 
GACTTGTGAT CACATTATTA GAGGAAACTC CTAACTAATA AGGATTAGGA 
TAAACAACAC TACATGTGGT ACACTCAACA ACTCAAAGAT TATCTCCTGA 
AACCTTATCC AACTGTTCTT CGGCCCCAAG CAGTGAT

AT2G01050.1

Model type: Protein coding
Short Description: zinc ion binding;nucleic acid binding
Computational Description: zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01060.1

Model type: Protein coding
Short Description: myb-like HTH transcriptional regulator family protein
Computational Description: myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR