ET6182

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6182

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 7098679 [Map]; Strand: c
- AT1G20490.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: 0; Region: exon1 (CDS)

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATCTA GGAAGCTATC 
CGTGACCTCC TTGCTTAACG GTGCTCCACC ACACCTAACC TTTCTCAGGG 
AGGTCCAATC GTACTTGGCC TTGAACTGAT CTGCACCGTT AATCATAGCT 
ACCAAAACCG GTGGAACCAA ACTCAGAATC GTGGCTTTGT ACTTCTCCAC 
CGCTTGCATC ATATCGTCGA GCCCGAATCT CCGGAGAATC ACCACCGTTG 
AACCCGATGC TACGGAGCCC ATTGCGAACG CCAATAACCC GAAGGAGTGG 
AACATCGGCA CGGTACATAC GAATATCTCG TCTCGTTTCC ATTTATCGTC 
GATGTATTTC GCAACGTAAG CTGTTAAATT CCGGTGAGAC AAAATCACTC 
CTTTGCTCGT CCCTGTGGTT CCCGACAATT AAAGCA

5 prime edge [+] show sequence

Chromosome: 1; Position: 7098578 [Map]; Strand: c
- AT1G20490.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: 0; Region: exon1 (CDS)

GTTGATATTT GTCAAGGATA TGCGTTGAGT GAATCGCACG GTTCAGGAGC 
TTCGACGGAA TCTGTGGAGG AGAGTCTGAA ATACGGTGCG GTTGGGTTGT 
TGTCGTCCGG TATTGAAGCG AGGATTGTGG ATCCGGAGAC GGGTCGGGTC 
ATGGGTGTGA ACCAACCCGG TGAGCTCTGG CTCAAGGGTC CTTCTATTTC 
TAAAGGTAAA CAAACACTTA ACGCTAAATA TTTGGCAGTA ATTAGATTAT 
TTGAAATAGA CATTTTATTA TTGGGAAATT ATTTATAAAA CAAATATTAT 
GATCAAGTTT TTAAGCAGTA ATGGGTTTTG GATTTGGTGT GAGTAATTGA 
GTTTTGTATA CATCTATATG ATTAGTATTC GTAACGTAGA CACCCTAACC 
GAAGAATGAC TTCAGTTCAT TTGCAAATTA AATGAAACTT ATTTAAGTGA 
ACTCAATACT ATTGAATAAC AAAAGAAACA CTCTTAAATC TGTCTTGGGA 
CAAAACAAAA ACAATTTTTT GCATGGCAA

AT1G20490.1

Model type: Protein coding
Short Description: AMP-dependent synthetase and ligase family protein
Computational Description: AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).
Link: InterPro Scan - TAIR