ET6194

CSHL Arabidopsis genetrap mutant lines

Original: ET6194

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6194

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26387128 [Map]; Strand: c
      • AT1G70060.1 - [+] show detail - SIN3-like 4
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: ET6194 - 5-prime edge 
    AACATCTTTA TCCAACTCCC TAGCTTGCCG CACTTGATTA CTTTCATTGA 
    CTTTTCGAGG GCCATTTGAC CGCATAGAGT TGGCAATACT AGCTCCATTT 
    TGAGGACTGA CAGCATCTTC TTGGTCTTCT CGGTCATGGT TTGTAGACTT 
    GACAGCATCT TCTCGGTCTT CGGCACCTTG AGGGCGAGAA GGAACACCAA 
    ATATTGGTTC CAAAAATTCT GTCCATACCT TCATTACCTT ATCTAACTGT 
    TCTGTTGAAC ACATTTCTCC ACATGAATAC TTGATCAGCT GATACAGATC 
    TTCGTGAAGA TCAGGATCCG GATAATCAAA ACTCATATTG GA

AT1G70060.1

Model type
Protein coding
Short Description
SIN3-like 4
Curator Summary
Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).
Computational Description
SIN3-like 4 (SNL4); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 3 (TAIR:AT1G24190.2); Has 2571 Blast hits to 1108 proteins in 232 species: Archae - 4; Bacteria - 56; Metazoa - 1028; Fungi - 808; Plants - 415; Viruses - 14; Other Eukaryotes - 246 (source: NCBI BLink).
Link
InterPro Scan - TAIR