ET6199

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile
embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) present in fewer numbers in organism (PATO:0001997)

Original: ET6199

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 21507294 [Map]; Strand: c
- AT3G58070.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: 0; Region: exon1 (CDS)

GTAGAGGTAT TTTACCGACC GTTACTGACC GTTTTCATCC CTACACCTAG 
GGCTTGTGAA GTAGGAAAAT TTCTAAAGCA ATAGTGACAC TCGAATCTCC 
TGTTGTGGCT GATGCTATTA TTGTCCGTAC TGTTGTCTCC GGTTTGGTCT 
TCTTCCTCTT CTTCATCTCA CTCGACGATC TGGTAAGGAT CGGTGTAGTC 
TTCTTGACCG GTAGTAATAG AGAAATCTCT GCCGGTGAAA TCTTTTCCGA 
AGACACGAAT GGGTTTAGGG TTCTTATCAC TAGGACAGCG AATGAAAGGA 
AGCTGAGAGA AGGATTCCAC GTTCATGAAA TCTTGAGTTT CA

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: ET6199 - 3-prime edge
```
CCGGAAGAAA AAAAAAAATC TCGGCCGGGA AAATCTTTTC CAAAAACACA 
AAGGGGTTAA GGG
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 18191310 [Map]; Strand: c
- AT3G49060.2 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: intron1 (CDS)
- AT3G49060.1 - [+] show detail - U-box domain-containing protein kinase family protein
  Distance: 0; Region: intron1 (CDS)

TTCCTCCTAC TTTCTCCCTG AAGTACATTG TATAAAACCT GTAACATATG 
TTGGTTTGCT TGGCCAATCT GTCTTAGAGC TTGGAAATTT TAATTTGTTT 
GTGGAAGCAG GACATTGTGA TGACTTTAGC TGCTATGTAT AGGGAAAAAA 
ATTATTGTCC ATTGCCAAGG ATGTTAAGAC TTGTTTACCT GCAGCGCACA 
AGAAACTTGT TGGTGGTAGC TTTAAAAAGC ATGATGTCAA GGTGATTGAG 
CGAGTTGAGA AACCCAAAGT GGATGAACTG ATGAATTCTT ATCTCCAACT 
TTTATCTGAA ACTGAGGTAT CAATTCTCTC TTTTTTCGTG TAAGGTTGTT 
ATTGATTGTA ATCTCACACA AACTATCAGT TAGCTGTTTT GGTGTTCAAG 
TTTAATTGAA GTAAGGCAAC TCATTTTGAA TATCCCTGTG ATCTTGGTGG 
ATATAATTTT TGTTCATATA ATGACATAAC CTACATGGAA AAACCTTGTG 
C

5 prime edge [+] show sequence

Chromosome: 3; Position: 21507229 [Map]; Strand: c
- AT3G58070.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: 0; Region: exon1 (CDS)

TCTANCTNNC TTANGGACAN CANAACGCTC NGAAGCGNCG AACGTCAGCT 
TGCCAAACGC GGTGTTTCCT CTTACTTTTA TCATCCTGAC AATAACCCTT 
ACAGTTACCG TCATTACCCG TCGTGGACCA ATGGTCCGTT AACCGCGGCT 
AGGTCCTATG GAGGATTTTC TTCTGGTCCT AAGCCGTCGG GGTATTATAC 
ACGACCCAGC TATGGGAGTC AGTTAGGACT ATGGCGTCTA CCGCCTCGCG 
TTCAAGGCGT TTATAACTCA AACGCAGCGT TTACTAGTAA TGGCTCTTCT 
TCTTCNTCTC TCTCGACNAA

5 prime edge [+] show sequence

Chromosome: 3; Position: 21507197 [Map]; Strand: c
- AT3G58070.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: 0; Region: exon1 (CDS)

CAAACGCGAA CGTCAGCTTG CCAAACGCGG GGTTTCCTCT TACTTTTATC 
ATCCTGACAA TAACCCTTAC AGTTACCGTC ATTACCCGTC GTGGACCAAT 
GGTCCGTTAA CCGCGGCTAG GTCCTATGGA GGATTTTCTT CTGGTCCTAA 
GCCGTCGGGG TATTATACAC GACCCAGCTA TGGGAGTCAG TTAGGACTAT 
GGCGTCTACC GCCTCGCGTT CAAGGCGTTT ATAACTCAAA CGCAGCGTTT 
ACTAGTAATG GCTCTTCTTC

AT3G49060.1

Model type: Protein coding
Short Description: U-box domain-containing protein kinase family protein
Computational Description: U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 84033 Blast hits to 83330 proteins in 4034 species: Archae - 70; Bacteria - 7751; Metazoa - 31165; Fungi - 5115; Plants - 29189; Viruses - 207; Other Eukaryotes - 10536 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G49060.2

Model type: Protein coding
Short Description: U-box domain-containing protein kinase family protein
Computational Description: U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1).
Link: InterPro Scan - TAIR

AT3G58070.1

Model type: Protein coding
Short Description: C2H2 and C2HC zinc fingers superfamily protein
Curator Summary: Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile
Computational Description: GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR