ET6237

CSHL Arabidopsis genetrap mutant lines

Original: ET6237

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6237

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10911406 [Map]; Strand: c
      • AT1G30757.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1622; Region: intergenic
      • AT1G30760.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: -6872; Region: intergenic
    Flanking Genome Sequence: ET6237 - 5-prime edge 
    ACACCATCTG TCAAACTCAA AAGTCAATAA TTTTATATAA TTTCCTAGTT 
    TCACCAGCCG GCTCATGATC CGCATGCAAA TCTTGAAATA TTCTTGATAA 
    CACAATAAAT TTATTAAATT CTTTGTATG

AT1G30757.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30760.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT2G34790.1); Has 5139 Blast hits to 5066 proteins in 829 species: Archae - 62; Bacteria - 2468; Metazoa - 28; Fungi - 1653; Plants - 688; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).
Link
InterPro Scan - TAIR