ET6263

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6263

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 4033768 [Map]; Strand: w
  - AT5G12430.1 - [+] show detail - Heat shock protein DnaJ with tetratricopeptide repeat
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: ET6263 - 3-prime edge
```
TGGACGGAGC AGCAGCAATG AGGGTTTTGT ATTTGGTGGA TCATCTCATG 
TTGATAAATT GCAATCTGAT
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 4034311 [Map]; Strand: w
- AT5G12430.1 - [+] show detail - Heat shock protein DnaJ with tetratricopeptide repeat
  Distance: -225; Region: promoter

AACAAGGGTA TTGATAAATG TTGAATCTCT TTTCAGGAGA TGGATCGATA 
AAGGAGAAGA AATCAAGAAA TTTTCAAATT AATGGCTGGA TTCAAGGAGA 
GATATTGGGT CATCGTCCAT TGTTGTTGTT GTTGCGGAAC ACAAGAAAGA 
AAGCAAAATT AAAAAATTAG TAATGAAAAT AATTGCTTTG AATATGTCGC 
CGTCCTTACT TCCATTTTCT TCATCTTCCA AAAGACTTGT TTCAAAGACC 
TAAACCAACA TTTTTTCTGA TTCAACAAAA AGAACAATCC TTTTTAATGC 
AAAATCTCAA CTTTATTTTA CTTTACACAT CTTTTGGTAT TTGTTCATTG 
GATTGGACAC GGGACCTCTG TTTTATAGTT GCAAAAGTTG CAATGTATGG 
TTCATTCCTC TCACTGTAAT GAAATGATAA TCTAATATCA TTCACATATT 
TGTTACTTAT GCTGCATAAG TTATGCATAT GTATGTGTTC TAAAATGGAC 
CATGGGCCGT CGGAGGTAAT TTGATGCCAT AA

AT5G12430.1

Model type: Protein coding
Short Description: Heat shock protein DnaJ with tetratricopeptide repeat
Computational Description: Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT2G41520.1); Has 27844 Blast hits to 24585 proteins in 3132 species: Archae - 222; Bacteria - 9738; Metazoa - 5941; Fungi - 3019; Plants - 3250; Viruses - 11; Other Eukaryotes - 5663 (source: NCBI BLink).
Link: InterPro Scan - TAIR