ET6338

CSHL Arabidopsis genetrap mutant lines

Original: ET6338

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6338

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26395150 [Map]; Strand: w
      • AT5G65990.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6338 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTAGTG AGGAGGCCCA AGAGCCNCCC 
    AGTCTTCTTG AAGGTGTACG GAAGTCCGAG CACGCCGGCG CCGACGATGG 
    CGATGAAGAC ATTTGCAAAG GTTTTTGGCT GCGACGACAA TGTTCGAGGT 
    CCCAAAAGAG GAGTGTCTTC CGTCGGCGGC AGCGAATGGG AGGATGATCC 
    CGAAGGCAGC GAATGGGAGG ACGATCCCGC TTCCTGATCG TACCTCATGC 
    CGATCGAAAT TGAGAGTGAA GAAGAGCCGA GAGTCACAGT CTACGTTAAT 
    GGCGATCGAT CTCTGATTGG GTGTGTTGTA TATGTTTGTG TGGTCAAATG 
    ATATCTGTTT TATCTTTTTC CCTTTTTTAA GTCATTAAGA AAAAGATACA 
    AAACTTTCAT TGGCTCTTGT TTGGGGTTTC TCAATTTAAG AAATAGTAGT 
    ATTTGCTTAA GCAATAAACA AAACTCTGAC ATTTGACTCG TGTTACTTAT 
    GTGCTTAACC AAACTAAATT TTCTAATCAA CTAATGA

AT5G65990.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR