ET6345

CSHL Arabidopsis genetrap mutant lines

Original: ET6345

Phenotypes

Morphological phenotypes

Original description

  • late flowering
Anatomical entity
/structure development stage
Phenotypes
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)

Original: ET6345

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17649260 [Map]; Strand: c
      • AT2G42380.1 - [+] show detail - Basic-leucine zipper (bZIP) transcription factor family protein
        Distance: -315; Region: promoter
      • AT2G42380.2 - [+] show detail - Basic-leucine zipper (bZIP) transcription factor family protein
        Distance: -315; Region: promoter
      • AT2G42388.1 - [+] show detail - other RNA
        Distance: -965; Region: promoter
    Flanking Genome Sequence: ET6345 - 3-prime edge
    TTATCGAAAN CGGTGCAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
    CCCTACTTAT ATCCAAACCA AGTAGCCAAA ATCATATTAT TCTTCTCTCT
    CGACGAGAAT GGTTAATACG TTTCTNTCNT ATGAATGGTT TTTCGANNGG
    TTCATGTNAA TGCAATATCT CGTNTTTGTT GCANATCNTA TGTGTCAATT
    AATAATTTTG GTACATGTAA ACCTACGTCA AGCAAGTACA ATGAATACAT
    GAGTTAATAT CACACGNTAT CATCTATATA TAGAATTATA GAATTAAGTC
    GAATNGATAA ACATGACTTT ATTTATNGGA AAACAANTCC GACGACTTAG
    CTTATTTATC NNATATCTTG CANCATGGTA ATGGATTATC TTGTTACCAT
    CACTGCTATG AGGAGGGCTA AACAATGCAT GGAGAAAGTA GGGTAGTGGA
    CGAGTGGAGA GAGAGTGAAG AGTATAATGT TGATGTGTGA GTCCATGTGA
    TTTGTTTTCT GTACTCTTTT TTTCCCCTCT ATATTTGCTT TGTCCCAGAC
    CACACCCACA TGTAGGACAC TTGCTACTTT TTTTTCCTCN CTTAAATCGT
    ATAATTTGGG ATATTTGGTC NGTCCAATTT TTTACTTTNC NGGATCNATN
    GGANTNTTTA NCGGGAANCN ANATNTNNNG GTNNGGTGGA AATGTTAAAA
    TTATAAANCA AACTTGAAAA ANTTATATGT TACNTGTNTT TNCGGGANTA
    TNTNTTNCNG TGAATTATTT CCCCTAAATT TTTGTCGGGA NANTTANTCT
    CTNAAAAAAT NTTTCCNNGA TTTNCNAANC CNNCCAATTT T
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17649224 [Map]; Strand: c
      • AT2G42380.1 - [+] show detail - Basic-leucine zipper (bZIP) transcription factor family protein
        Distance: -279; Region: promoter
      • AT2G42380.2 - [+] show detail - Basic-leucine zipper (bZIP) transcription factor family protein
        Distance: -279; Region: promoter
    Flanking Genome Sequence: ET6345 - 5-prime edge
    ATTNTCCCAT CCGGCCTCTC CNAGCCTCCA AATCTCTGTA CNTAGATTAA 
    AAAGAAAAAA ACCAGTGGAG GAGAATTTCC AGTTATACCG TTGAGACCTT
    TAGCCTCACT TCTCAAGACA GCTGTTTCAT AGCTGTCCGA TCTCAATATC
    TCCCTCCATG TGGCCCTACT CAGAGAGATA AATTAAACAC TTTGATCACA
    TCGAATTTAT TATGTTCTTT CATAAGATTT TACATAATAT ATATCTCATG
    TATA

AT2G42380.1

Model type
Protein coding
Short Description
Basic-leucine zipper (bZIP) transcription factor family protein
Curator Summary
Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.
Computational Description
BZIP34; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, carpel; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT3G58120.1); Has 9637 Blast hits to 4324 proteins in 138 species: Archae - 7; Bacteria - 28; Metazoa - 99; Fungi - 257; Plants - 885; Viruses - 11; Other Eukaryotes - 8350 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42380.2

Model type
Protein coding
Short Description
Basic-leucine zipper (bZIP) transcription factor family protein
Curator Summary
Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.
Computational Description
BZIP34; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, carpel; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT3G58120.1); Has 10078 Blast hits to 4770 proteins in 174 species: Archae - 9; Bacteria - 38; Metazoa - 108; Fungi - 291; Plants - 1254; Viruses - 11; Other Eukaryotes - 8367 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42388.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR