ET6358

CSHL Arabidopsis genetrap mutant lines

Original: ET6358

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6358

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16135076 [Map]; Strand: w
      • AT2G38560.1 - [+] show detail - transcript elongation factor IIS
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6358 - 3-prime edge
    CGATCGTTTT CATCCCTAGT AACAACAACA CAAATCAATG CAACGAGATT 
    AAGCAATCAA CACCTGAGAA AAACCCTCCT AAATGCAACA TATATAAACC
    TTTTCCTAAA TGCAAAATAA ATCAATCTTT TTTAGGGTTA CGAGAAGATA
    ATCAGAAACG AACCTGAGTC GCAACGAGGG TATCGTATGT GACAGGAAAC
    TTCTTGAGCT GTTTAAGGGC ATCGATACAT TGAGAAACCT CAGGACCTGA
    AGAGGTAACA CCATACTCG

AT2G38560.1

Model type
Protein coding
Short Description
transcript elongation factor IIS
Curator Summary
Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
Computational Description
transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink).
Link
InterPro Scan - TAIR