ET6370

CSHL Arabidopsis genetrap mutant lines

Original: ET6370

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6370

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17658168 [Map]; Strand: c
      • AT3G47860.1 - [+] show detail - chloroplastic lipocalin
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6370 - 3-prime edge 
    GACCGTTTTC ATCCCTAATC TTGAGGTTAA TCGGAGCTAA TGAAGTTGTG 
    ATTCAAAACA TAAAACCATA CCTTGTTGAA GTGGCAGCAG GTGGAGAGAA 
    GCTTTGAGAA GAAACTGGTC TTGAGAGGCT TATACTACTA CTTAATAATA 
    TCATATCTCT CTCTTTCTCT CTCACTTCTT CTCTCTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17658040 [Map]; Strand: c
      • AT3G47860.1 - [+] show detail - chloroplastic lipocalin
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET6370 - 5-prime edge 
    AGGAACAAAG TTACATACTC ATATCCTGGA ATGGAACTAT CTTGGATTAT 
    AGAGATTCTT GGTTTACTGA TCTCAGAAAT TCTGTTTTCT CTTGGTTTCA 
    CTTATGACAG GAGATCTCAT TCCTCTGTCA CAGTCAAGTG CTGCTGTTCT 
    TCCAGAAGGT TGTTGAAGAA TCCTGAGTTA AAATGTTCCT TGGAGAATCT 
    CTTTGAAATC CAGGCTTTGA GGAAGTGTTT TGTTTCAGGG TTTGCAGCTA 
    TTTTGCTTCT CTCTCAGGCA GGCCAGGTAT GTTGGAGCCG ACATTGCTAT 
    AAGCATGTTC GATTGCAACC ACAAGCGGTC TGAAATTTCT GAGTTTCTTC 
    TGGCAGGGTA TANCGTTGGA TCTCTCATCT GGTTATCAGA ACATTTGCCA 
    ACTAGGGAGT GCTGCTGCTG TGGGAGAAAA CAAGCTGACT CTTCCATCTG 
    ATGGTGACTC GGAATCAATG ATGATGATGA TGATGAGAGG CATGACTGCT 
    AAGAACTTTG ACCCTGTTAG GTACTCTGGA AGATGGTTTG AAGTAGCTTC 
    TCTTAAGCGT GGATTT

AT3G47860.1

Model type
Protein coding
Short Description
chloroplastic lipocalin
Curator Summary
Encodes a chloroplastic lipocalin AtCHL. Located in thylakoid lumen. Involved in the protection of thylakoidal membrane lipids against reactive oxygen species, especially singlet oxygen, produced upon excess light.
Computational Description
chloroplastic lipocalin (CHL); FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin-like (InterPro:IPR013208), Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 184 Blast hits to 184 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 66; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR