ET6400

CSHL Arabidopsis genetrap mutant lines

Original: ET6400

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6400

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17644134 [Map]; Strand: c
      • AT4G37550.1 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G37550.2 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G37550.3 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET6400 - 5-prime edge 
    CCTTCAAAGT ACCAAATAGC TTTGGTACGC ACAAGGGAAA TGGTACAGTC 
    AAGAAACCGC CACCATTCTC TCTATCAAAA GAACCAGTGA ATCCCCATTC 
    ATCTCTCTCG A

AT4G37550.1

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37550.2

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37550.3

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1).
Link
InterPro Scan - TAIR