ET6428

CSHL Arabidopsis genetrap mutant lines

Original: ET6428

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
  • stunted plants with necrotic leaves
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: ET6428

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27157453 [Map]; Strand: c
      • AT1G72170.1 - [+] show detail - Domain of unknown function (DUF543)
        Distance: 0; Region: intron2 (CDS)
      • AT1G72175.1 - [+] show detail - RING/U-box protein with domain of unknown function (DUF 1232)
        Distance: -422; Region: promoter
    Flanking Genome Sequence: ET6428 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCGAT CGATCTTAAA CCCATGAGAA 
    TGTAAAAGAA CATAAGGTTG AATATTTTCT TTATTCTTCT TATTTTTGCA 
    GGCTGCAGAC GAGTAGACTA TGTCGATAAA GTGGAAGTTA GTAACACATC 
    CAATGATCGG GGTGTTCAGA AACAGAGCTA TTATCATGCA ATGCTTTGTT 
    GAATTGTTTC CTAAACCTGC AAAGACAAGA GTCTATTGAG ATAATGTCAA 
    ATGTAAAAAC CTTTTTTTAT TCGCTCTATC TCTCTCCCAA TGGTTTTGAA 
    CAAGTGAATA CAAAAATGTT GCATCAATCA CCCATTCTAT TTTTTCAACC 
    TCAACAAGGA TCATCATGCC AA

AT1G72170.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF543)
Computational Description
Domain of unknown function (DUF543); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF543) (TAIR:AT1G22520.1); Has 92 Blast hits to 92 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72175.1

Model type
Protein coding
Short Description
RING/U-box protein with domain of unknown function (DUF 1232)
Computational Description
FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G22510.1); Has 671 Blast hits to 671 proteins in 108 species: Archae - 0; Bacteria - 8; Metazoa - 504; Fungi - 36; Plants - 67; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR