ET6437

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6437

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 23737593 [Map]; Strand: w
- AT5G58780.1 - [+] show detail - Undecaprenyl pyrophosphate synthetase family protein
  Distance: -258; Region: promoter

AAGAANNNAN TGCTACTTAC CGTTTTCACC GTCTGGTAAT AAACTAATAC 
GGATCAATAT TCAGTAGTGA TGTATTAGGA ATCTTTGATC AAAAATTAAA 
CATAAACATG TCATCGGATT GGTGACATAC GAATAAAAAA TACTATTGAT 
CTATTAATTA GTGATTAAAC ATTGAAAATG ATTTAAGTAT AAGTTTCTCA 
ACGTACAAGT TTAATACGTA CGGCCTGTTT TTACGTAAAA AAAGAGAAAG 
AAGTTTGATC GATCAGGTGA TGCCTTTGGA TTCTTCTTTA TATGAGAAAC 
TTTCAATGAG TCGAACAAAT AAATATCTCG AGGCAATGCC AAATTAATGA 
ATTAAGACAT AAGCACAACA ATGTTGTCTG TTCTCTCTTC TCCTTTATCT 
CTCCTCTTTC TGTTTATCAT CTCTTGTTTC TTCTCNCTCA

3 prime edge [+] show sequence

Chromosome: 4; Position: 18527768 [Map]; Strand: c
- AT4G39952.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACGTCG ATCGTCATAG 
TAGTGTGATT CTCTGCGATC AGAGCTTGAG CTTAGAGTCT CTGCGTAAAC 
ACAACGCTCT TATCATCACC GGAGGACTCT CGGAAAACAT CTTCGTCGCA 
TCGAAGCTAA TTTCATCTTA CGCTTCTTAC GGGAAACCCA ATTTGTCTTC 
CAGAGTCTTC CATTTGGTTA CTCGAAGAGA TGTCTTTCTT TGGAATTCTA 
TTATCAAAGC ACATTTCTCC AATGGGGATT ATGCTCGATC CTTGTGTT

5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: ET6437 - 5-prime edge
```
AGAGTATGTG TTCTTTTATT AAATTGAAAA GAAAAA
```
5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: ET6437 - 5-prime edge
```
GGAAAAAAAA ATTTTAAATT GGGAAAAAGG AATTAATTTT TTTGGGGTCC 
AAAATGGAAT TTG
```

AT4G39952.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G03580.1); Has 47712 Blast hits to 13890 proteins in 262 species: Archae - 2; Bacteria - 17; Metazoa - 157; Fungi - 156; Plants - 46708; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58780.1

Model type: Protein coding
Short Description: Undecaprenyl pyrophosphate synthetase family protein
Computational Description: Undecaprenyl pyrophosphate synthetase family protein; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: cis-prenyltransferase (TAIR:AT2G23410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR